Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Shmt1P50431 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Shmt1P50431 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Shmt1P50431 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Shmt1P50431 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC20.01■□□□□ 0.79
Shmt1P50431 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Shmt1P50431 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Shmt1P50431 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Shmt1P50431 Gm42555-201ENSMUST00000199304 1039 ntBASIC20.01■□□□□ 0.79
Shmt1P50431 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
Shmt1P50431 Gm10602-201ENSMUST00000098239 609 ntBASIC20.01■□□□□ 0.79
Shmt1P50431 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Shmt1P50431 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Shmt1P50431 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Shmt1P50431 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.01■□□□□ 0.79
Shmt1P50431 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Shmt1P50431 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Shmt1P50431 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20■□□□□ 0.79
Shmt1P50431 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20■□□□□ 0.79
Shmt1P50431 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Shmt1P50431 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Shmt1P50431 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Shmt1P50431 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC20■□□□□ 0.79
Shmt1P50431 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Shmt1P50431 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC20■□□□□ 0.79
Shmt1P50431 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20■□□□□ 0.79
Shmt1P50431 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Shmt1P50431 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Shmt1P50431 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
Shmt1P50431 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC19.99■□□□□ 0.79
Shmt1P50431 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Shmt1P50431 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Shmt1P50431 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Shmt1P50431 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Shmt1P50431 AC112142.1-201ENSMUST00000228796 918 ntBASIC19.99■□□□□ 0.79
Shmt1P50431 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Shmt1P50431 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Shmt1P50431 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC19.99■□□□□ 0.79
Shmt1P50431 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Shmt1P50431 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Shmt1P50431 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Shmt1P50431 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Shmt1P50431 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Shmt1P50431 Gm18688-201ENSMUST00000204695 1859 ntBASIC19.99■□□□□ 0.79
Shmt1P50431 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Shmt1P50431 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Shmt1P50431 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Shmt1P50431 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Shmt1P50431 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Shmt1P50431 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC19.98■□□□□ 0.79
Shmt1P50431 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Shmt1P50431 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Shmt1P50431 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Shmt1P50431 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Shmt1P50431 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC19.98■□□□□ 0.79
Shmt1P50431 AC124603.1-201ENSMUST00000223843 308 ntBASIC19.98■□□□□ 0.79
Shmt1P50431 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Shmt1P50431 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Shmt1P50431 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Shmt1P50431 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.97■□□□□ 0.79
Shmt1P50431 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC19.97■□□□□ 0.79
Shmt1P50431 AC131586.2-201ENSMUST00000228370 1512 ntBASIC19.97■□□□□ 0.79
Shmt1P50431 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Shmt1P50431 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC19.97■□□□□ 0.79
Shmt1P50431 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC19.97■□□□□ 0.79
Shmt1P50431 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Shmt1P50431 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Shmt1P50431 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Shmt1P50431 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shmt1P50431 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Shmt1P50431 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shmt1P50431 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Shmt1P50431 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Shmt1P50431 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC19.96■□□□□ 0.79
Shmt1P50431 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shmt1P50431 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shmt1P50431 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shmt1P50431 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shmt1P50431 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shmt1P50431 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shmt1P50431 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shmt1P50431 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
Shmt1P50431 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Shmt1P50431 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
Shmt1P50431 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shmt1P50431 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shmt1P50431 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shmt1P50431 Gm27011-201ENSMUST00000182352 972 ntBASIC19.95■□□□□ 0.78
Shmt1P50431 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shmt1P50431 Gm6365-201ENSMUST00000054711 744 ntBASIC19.95■□□□□ 0.78
Shmt1P50431 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Shmt1P50431 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shmt1P50431 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shmt1P50431 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shmt1P50431 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shmt1P50431 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shmt1P50431 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shmt1P50431 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Shmt1P50431 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Shmt1P50431 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 74.7 ms