Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Usp4P35123 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC19.76■□□□□ 0.75
Usp4P35123 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC19.76■□□□□ 0.75
Usp4P35123 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Usp4P35123 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp4P35123 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp4P35123 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Usp4P35123 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp4P35123 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp4P35123 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp4P35123 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.75■□□□□ 0.75
Usp4P35123 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp4P35123 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp4P35123 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp4P35123 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp4P35123 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usp4P35123 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp4P35123 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp4P35123 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp4P35123 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp4P35123 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp4P35123 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp4P35123 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usp4P35123 Gm18284-201ENSMUST00000172604 624 ntBASIC19.74■□□□□ 0.75
Usp4P35123 Mir7075-201ENSMUST00000184187 82 ntBASIC19.74■□□□□ 0.75
Usp4P35123 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp4P35123 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC19.73■□□□□ 0.75
Usp4P35123 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp4P35123 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp4P35123 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Usp4P35123 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
Usp4P35123 Gm43759-201ENSMUST00000196925 1261 ntBASIC19.73■□□□□ 0.75
Usp4P35123 Gm5297-201ENSMUST00000198555 1171 ntBASIC19.73■□□□□ 0.75
Usp4P35123 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp4P35123 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Usp4P35123 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Usp4P35123 Gm42939-201ENSMUST00000197514 2205 ntBASIC19.73■□□□□ 0.75
Usp4P35123 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
Usp4P35123 Gm42900-201ENSMUST00000197184 2167 ntBASIC19.73■□□□□ 0.75
Usp4P35123 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC19.73■□□□□ 0.75
Usp4P35123 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Usp4P35123 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Usp4P35123 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp4P35123 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp4P35123 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC19.72■□□□□ 0.75
Usp4P35123 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp4P35123 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Usp4P35123 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC19.72■□□□□ 0.75
Usp4P35123 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC19.72■□□□□ 0.75
Usp4P35123 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC19.72■□□□□ 0.75
Usp4P35123 Slc35b2-207ENSMUST00000226086 850 ntBASIC19.72■□□□□ 0.75
Usp4P35123 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp4P35123 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Usp4P35123 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Usp4P35123 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp4P35123 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp4P35123 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Usp4P35123 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.71■□□□□ 0.75
Usp4P35123 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp4P35123 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Usp4P35123 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp4P35123 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Usp4P35123 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Usp4P35123 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC19.71■□□□□ 0.75
Usp4P35123 Gm21168-201ENSMUST00000199646 1096 ntBASIC19.71■□□□□ 0.75
Usp4P35123 Gm2011-201ENSMUST00000203124 1263 ntBASIC19.71■□□□□ 0.75
Usp4P35123 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp4P35123 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Usp4P35123 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp4P35123 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Usp4P35123 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.71■□□□□ 0.75
Usp4P35123 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp4P35123 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp4P35123 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp4P35123 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp4P35123 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Usp4P35123 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp4P35123 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Usp4P35123 Gm8770-201ENSMUST00000121113 1109 ntBASIC19.7■□□□□ 0.74
Usp4P35123 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Usp4P35123 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp4P35123 Krt8-ps-201ENSMUST00000208495 945 ntBASIC19.7■□□□□ 0.74
Usp4P35123 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp4P35123 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp4P35123 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Usp4P35123 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Usp4P35123 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp4P35123 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp4P35123 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp4P35123 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp4P35123 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp4P35123 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC19.69■□□□□ 0.74
Usp4P35123 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp4P35123 Gm5576-201ENSMUST00000075809 1236 ntBASIC19.69■□□□□ 0.74
Usp4P35123 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp4P35123 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp4P35123 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp4P35123 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp4P35123 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC19.68■□□□□ 0.74
Usp4P35123 Gm45606-201ENSMUST00000209836 2795 ntBASIC19.68■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms