Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb3O54879 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb3O54879 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Hmgb3O54879 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC15.69■□□□□ 0.1
Hmgb3O54879 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Hmgb3O54879 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb3O54879 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC15.68■□□□□ 0.1
Hmgb3O54879 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb3O54879 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb3O54879 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
Hmgb3O54879 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Hmgb3O54879 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb3O54879 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Hmgb3O54879 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb3O54879 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb3O54879 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC15.68■□□□□ 0.1
Hmgb3O54879 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb3O54879 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb3O54879 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Hmgb3O54879 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC15.68■□□□□ 0.1
Hmgb3O54879 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb3O54879 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Hmgb3O54879 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb3O54879 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb3O54879 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb3O54879 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb3O54879 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb3O54879 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb3O54879 Gm16464-201ENSMUST00000117815 1095 ntBASIC15.67■□□□□ 0.1
Hmgb3O54879 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC15.67■□□□□ 0.1
Hmgb3O54879 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb3O54879 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb3O54879 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Hmgb3O54879 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb3O54879 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb3O54879 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Hmgb3O54879 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Hmgb3O54879 Gm5953-201ENSMUST00000220644 2616 ntBASIC15.66■□□□□ 0.1
Hmgb3O54879 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC15.66■□□□□ 0.1
Hmgb3O54879 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Hmgb3O54879 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC15.66■□□□□ 0.1
Hmgb3O54879 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Hmgb3O54879 Nsd1-203ENSMUST00000224156 1149 ntBASIC15.66■□□□□ 0.1
Hmgb3O54879 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Hmgb3O54879 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 Rncr4-201ENSMUST00000194541 2234 ntBASIC15.66■□□□□ 0.1
Hmgb3O54879 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Hmgb3O54879 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Hmgb3O54879 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb3O54879 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb3O54879 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb3O54879 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb3O54879 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb3O54879 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb3O54879 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC15.65■□□□□ 0.1
Hmgb3O54879 Gm6627-201ENSMUST00000218299 2386 ntBASIC15.65■□□□□ 0.1
Hmgb3O54879 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Hmgb3O54879 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb3O54879 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb3O54879 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb3O54879 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Hmgb3O54879 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC15.65■□□□□ 0.1
Hmgb3O54879 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Hmgb3O54879 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.1
Hmgb3O54879 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb3O54879 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb3O54879 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Hmgb3O54879 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb3O54879 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb3O54879 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Hmgb3O54879 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC15.64■□□□□ 0.09
Hmgb3O54879 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb3O54879 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb3O54879 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Hmgb3O54879 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC15.63■□□□□ 0.09
Hmgb3O54879 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb3O54879 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Hmgb3O54879 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb3O54879 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb3O54879 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Hmgb3O54879 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb3O54879 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb3O54879 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb3O54879 Gm35558-201ENSMUST00000222675 2219 ntBASIC15.63■□□□□ 0.09
Hmgb3O54879 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 50.1 ms