Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Scn2aA0A0J9YTW6 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
Scn2aA0A0J9YTW6 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Scn2aA0A0J9YTW6 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Scn2aA0A0J9YTW6 Gm12933-201ENSMUST00000120203 872 ntBASIC17.38■□□□□ 0.37
Scn2aA0A0J9YTW6 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC17.38■□□□□ 0.37
Scn2aA0A0J9YTW6 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn2aA0A0J9YTW6 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Scn2aA0A0J9YTW6 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC17.38■□□□□ 0.37
Scn2aA0A0J9YTW6 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn2aA0A0J9YTW6 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Scn2aA0A0J9YTW6 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Scn2aA0A0J9YTW6 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.36■□□□□ 0.37
Scn2aA0A0J9YTW6 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn2aA0A0J9YTW6 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn2aA0A0J9YTW6 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn2aA0A0J9YTW6 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn2aA0A0J9YTW6 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn2aA0A0J9YTW6 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Scn2aA0A0J9YTW6 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
Scn2aA0A0J9YTW6 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Scn2aA0A0J9YTW6 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Scn2aA0A0J9YTW6 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Scn2aA0A0J9YTW6 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn2aA0A0J9YTW6 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn2aA0A0J9YTW6 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn2aA0A0J9YTW6 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Scn2aA0A0J9YTW6 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Scn2aA0A0J9YTW6 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn2aA0A0J9YTW6 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn2aA0A0J9YTW6 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Scn2aA0A0J9YTW6 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn2aA0A0J9YTW6 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn2aA0A0J9YTW6 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn2aA0A0J9YTW6 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Scn2aA0A0J9YTW6 Gm45640-201ENSMUST00000210665 1896 ntBASIC17.35■□□□□ 0.37
Scn2aA0A0J9YTW6 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn2aA0A0J9YTW6 AC124392.1-201ENSMUST00000225172 5324 ntBASIC17.35■□□□□ 0.37
Scn2aA0A0J9YTW6 Gm6211-202ENSMUST00000167849 925 ntBASIC17.35■□□□□ 0.37
Scn2aA0A0J9YTW6 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn2aA0A0J9YTW6 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn2aA0A0J9YTW6 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Scn2aA0A0J9YTW6 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn2aA0A0J9YTW6 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Scn2aA0A0J9YTW6 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn2aA0A0J9YTW6 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn2aA0A0J9YTW6 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn2aA0A0J9YTW6 Nespas-201ENSMUST00000143738 1083 ntBASIC17.34■□□□□ 0.37
Scn2aA0A0J9YTW6 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC17.34■□□□□ 0.37
Scn2aA0A0J9YTW6 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Scn2aA0A0J9YTW6 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Scn2aA0A0J9YTW6 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn2aA0A0J9YTW6 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC17.33■□□□□ 0.37
Scn2aA0A0J9YTW6 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
Scn2aA0A0J9YTW6 Gm27032-201ENSMUST00000183124 1116 ntBASIC17.33■□□□□ 0.37
Scn2aA0A0J9YTW6 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn2aA0A0J9YTW6 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn2aA0A0J9YTW6 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn2aA0A0J9YTW6 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn2aA0A0J9YTW6 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Scn2aA0A0J9YTW6 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Scn2aA0A0J9YTW6 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn2aA0A0J9YTW6 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Scn2aA0A0J9YTW6 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
Scn2aA0A0J9YTW6 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Scn2aA0A0J9YTW6 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Scn2aA0A0J9YTW6 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn2aA0A0J9YTW6 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn2aA0A0J9YTW6 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Scn2aA0A0J9YTW6 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Scn2aA0A0J9YTW6 Gm43859-201ENSMUST00000200075 1412 ntBASIC17.32■□□□□ 0.36
Scn2aA0A0J9YTW6 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Scn2aA0A0J9YTW6 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC17.32■□□□□ 0.36
Scn2aA0A0J9YTW6 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn2aA0A0J9YTW6 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Scn2aA0A0J9YTW6 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms