Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Smc1aQ9CU62 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Smc1aQ9CU62 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Smc1aQ9CU62 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Smc1aQ9CU62 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Smc1aQ9CU62 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Smc1aQ9CU62 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Smc1aQ9CU62 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Smc1aQ9CU62 AC112142.1-201ENSMUST00000228796 918 ntBASIC21.07■□□□□ 0.96
Smc1aQ9CU62 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Smc1aQ9CU62 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Smc1aQ9CU62 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Smc1aQ9CU62 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Smc1aQ9CU62 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Smc1aQ9CU62 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Smc1aQ9CU62 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC21.06■□□□□ 0.96
Smc1aQ9CU62 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Smc1aQ9CU62 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Smc1aQ9CU62 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Smc1aQ9CU62 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Smc1aQ9CU62 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Smc1aQ9CU62 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Smc1aQ9CU62 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC21.06■□□□□ 0.96
Smc1aQ9CU62 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC21.05■□□□□ 0.96
Smc1aQ9CU62 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Smc1aQ9CU62 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Smc1aQ9CU62 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Smc1aQ9CU62 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
Smc1aQ9CU62 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Smc1aQ9CU62 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.05■□□□□ 0.96
Smc1aQ9CU62 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Smc1aQ9CU62 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC21.05■□□□□ 0.96
Smc1aQ9CU62 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Smc1aQ9CU62 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Smc1aQ9CU62 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Smc1aQ9CU62 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC21.04■□□□□ 0.96
Smc1aQ9CU62 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Smc1aQ9CU62 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC21.04■□□□□ 0.96
Smc1aQ9CU62 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Smc1aQ9CU62 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Smc1aQ9CU62 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Smc1aQ9CU62 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Smc1aQ9CU62 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Smc1aQ9CU62 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Smc1aQ9CU62 AC137127.1-201ENSMUST00000213466 1078 ntBASIC21.03■□□□□ 0.96
Smc1aQ9CU62 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC21.03■□□□□ 0.96
Smc1aQ9CU62 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Smc1aQ9CU62 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Smc1aQ9CU62 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Smc1aQ9CU62 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Smc1aQ9CU62 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
Smc1aQ9CU62 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Smc1aQ9CU62 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Smc1aQ9CU62 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Smc1aQ9CU62 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Smc1aQ9CU62 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Smc1aQ9CU62 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Smc1aQ9CU62 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Smc1aQ9CU62 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Smc1aQ9CU62 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Smc1aQ9CU62 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Smc1aQ9CU62 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC21.02■□□□□ 0.96
Smc1aQ9CU62 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
Smc1aQ9CU62 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Smc1aQ9CU62 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
Smc1aQ9CU62 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC21.02■□□□□ 0.96
Smc1aQ9CU62 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Smc1aQ9CU62 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC21.02■□□□□ 0.96
Smc1aQ9CU62 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Smc1aQ9CU62 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Smc1aQ9CU62 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC21.02■□□□□ 0.95
Smc1aQ9CU62 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
Smc1aQ9CU62 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smc1aQ9CU62 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Smc1aQ9CU62 Fam105a-203ENSMUST00000226170 3043 ntBASIC21■□□□□ 0.95
Smc1aQ9CU62 Rarb-207ENSMUST00000225921 2756 ntBASIC21■□□□□ 0.95
Smc1aQ9CU62 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Smc1aQ9CU62 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Smc1aQ9CU62 CT025689.6-201ENSMUST00000224991 1104 ntBASIC21■□□□□ 0.95
Smc1aQ9CU62 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC21■□□□□ 0.95
Smc1aQ9CU62 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC21■□□□□ 0.95
Smc1aQ9CU62 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Smc1aQ9CU62 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC21■□□□□ 0.95
Smc1aQ9CU62 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms