Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trim11Q99PQ2 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trim11Q99PQ2 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC21.59■■□□□ 1.05
Trim11Q99PQ2 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trim11Q99PQ2 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
Trim11Q99PQ2 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Trim11Q99PQ2 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trim11Q99PQ2 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trim11Q99PQ2 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trim11Q99PQ2 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trim11Q99PQ2 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim11Q99PQ2 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim11Q99PQ2 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC21.58■■□□□ 1.05
Trim11Q99PQ2 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC21.58■■□□□ 1.05
Trim11Q99PQ2 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim11Q99PQ2 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
Trim11Q99PQ2 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC21.58■■□□□ 1.05
Trim11Q99PQ2 Gm26833-201ENSMUST00000180899 440 ntBASIC21.58■■□□□ 1.05
Trim11Q99PQ2 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim11Q99PQ2 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
Trim11Q99PQ2 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim11Q99PQ2 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Trim11Q99PQ2 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.58■■□□□ 1.04
Trim11Q99PQ2 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Trim11Q99PQ2 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Trim11Q99PQ2 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Trim11Q99PQ2 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim11Q99PQ2 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim11Q99PQ2 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC21.57■■□□□ 1.04
Trim11Q99PQ2 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim11Q99PQ2 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC21.57■■□□□ 1.04
Trim11Q99PQ2 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim11Q99PQ2 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim11Q99PQ2 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim11Q99PQ2 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim11Q99PQ2 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim11Q99PQ2 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
Trim11Q99PQ2 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim11Q99PQ2 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim11Q99PQ2 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim11Q99PQ2 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Trim11Q99PQ2 Gm5112-201ENSMUST00000204407 2368 ntBASIC21.56■■□□□ 1.04
Trim11Q99PQ2 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trim11Q99PQ2 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
Trim11Q99PQ2 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trim11Q99PQ2 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trim11Q99PQ2 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
Trim11Q99PQ2 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
Trim11Q99PQ2 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Trim11Q99PQ2 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trim11Q99PQ2 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trim11Q99PQ2 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trim11Q99PQ2 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trim11Q99PQ2 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC21.55■■□□□ 1.04
Trim11Q99PQ2 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trim11Q99PQ2 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trim11Q99PQ2 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trim11Q99PQ2 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC21.55■■□□□ 1.04
Trim11Q99PQ2 Gm43017-201ENSMUST00000198296 752 ntBASIC21.55■■□□□ 1.04
Trim11Q99PQ2 CT030146.1-201ENSMUST00000220919 217 ntBASIC21.55■■□□□ 1.04
Trim11Q99PQ2 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Trim11Q99PQ2 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trim11Q99PQ2 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trim11Q99PQ2 Gm7860-201ENSMUST00000121190 879 ntBASIC21.54■■□□□ 1.04
Trim11Q99PQ2 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Trim11Q99PQ2 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Trim11Q99PQ2 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trim11Q99PQ2 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Trim11Q99PQ2 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trim11Q99PQ2 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Trim11Q99PQ2 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim11Q99PQ2 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Trim11Q99PQ2 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim11Q99PQ2 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Trim11Q99PQ2 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Trim11Q99PQ2 Gm40848-201ENSMUST00000221998 324 ntBASIC21.53■■□□□ 1.04
Trim11Q99PQ2 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim11Q99PQ2 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim11Q99PQ2 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Trim11Q99PQ2 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim11Q99PQ2 Rncr4-201ENSMUST00000194541 2234 ntBASIC21.53■■□□□ 1.04
Trim11Q99PQ2 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim11Q99PQ2 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim11Q99PQ2 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim11Q99PQ2 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim11Q99PQ2 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Trim11Q99PQ2 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Trim11Q99PQ2 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim11Q99PQ2 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim11Q99PQ2 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim11Q99PQ2 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim11Q99PQ2 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim11Q99PQ2 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim11Q99PQ2 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim11Q99PQ2 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Trim11Q99PQ2 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim11Q99PQ2 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
Trim11Q99PQ2 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim11Q99PQ2 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim11Q99PQ2 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms