Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC21.6■■□□□ 1.05
Syne4Q8CII8 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Syne4Q8CII8 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Syne4Q8CII8 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC21.6■■□□□ 1.05
Syne4Q8CII8 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Syne4Q8CII8 Gm15378-201ENSMUST00000121894 207 ntBASIC21.6■■□□□ 1.05
Syne4Q8CII8 Gm20100-201ENSMUST00000209418 2272 ntBASIC21.6■■□□□ 1.05
Syne4Q8CII8 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Syne4Q8CII8 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Syne4Q8CII8 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Syne4Q8CII8 AC152827.1-201ENSMUST00000221143 2189 ntBASIC21.6■■□□□ 1.05
Syne4Q8CII8 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC21.59■■□□□ 1.05
Syne4Q8CII8 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Syne4Q8CII8 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Syne4Q8CII8 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Syne4Q8CII8 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
Syne4Q8CII8 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC21.58■■□□□ 1.05
Syne4Q8CII8 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Syne4Q8CII8 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC21.58■■□□□ 1.05
Syne4Q8CII8 Gm37055-201ENSMUST00000191866 133 ntBASIC21.58■■□□□ 1.05
Syne4Q8CII8 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Syne4Q8CII8 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC21.58■■□□□ 1.05
Syne4Q8CII8 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Syne4Q8CII8 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Syne4Q8CII8 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Syne4Q8CII8 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Syne4Q8CII8 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Syne4Q8CII8 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
Syne4Q8CII8 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Syne4Q8CII8 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Syne4Q8CII8 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Syne4Q8CII8 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Syne4Q8CII8 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
Syne4Q8CII8 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Syne4Q8CII8 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC21.56■■□□□ 1.04
Syne4Q8CII8 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Syne4Q8CII8 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Syne4Q8CII8 H2-K2-201ENSMUST00000174250 1049 ntBASIC21.56■■□□□ 1.04
Syne4Q8CII8 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Syne4Q8CII8 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Syne4Q8CII8 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Syne4Q8CII8 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Syne4Q8CII8 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Syne4Q8CII8 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Syne4Q8CII8 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Syne4Q8CII8 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC21.55■■□□□ 1.04
Syne4Q8CII8 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Syne4Q8CII8 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Syne4Q8CII8 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC21.55■■□□□ 1.04
Syne4Q8CII8 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC21.55■■□□□ 1.04
Syne4Q8CII8 Gm9484-201ENSMUST00000195892 1159 ntBASIC21.55■■□□□ 1.04
Syne4Q8CII8 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Syne4Q8CII8 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
Syne4Q8CII8 AC124392.1-201ENSMUST00000225172 5324 ntBASIC21.55■■□□□ 1.04
Syne4Q8CII8 Gm32699-201ENSMUST00000221728 1988 ntBASIC21.55■■□□□ 1.04
Syne4Q8CII8 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC21.55■■□□□ 1.04
Syne4Q8CII8 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Syne4Q8CII8 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC21.55■■□□□ 1.04
Syne4Q8CII8 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Syne4Q8CII8 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Syne4Q8CII8 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Syne4Q8CII8 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Syne4Q8CII8 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Syne4Q8CII8 Mir1199-201ENSMUST00000117015 119 ntBASIC21.54■■□□□ 1.04
Syne4Q8CII8 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC21.54■■□□□ 1.04
Syne4Q8CII8 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Syne4Q8CII8 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Syne4Q8CII8 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Syne4Q8CII8 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Syne4Q8CII8 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
Syne4Q8CII8 Gm15847-201ENSMUST00000121417 1065 ntBASIC21.53■■□□□ 1.04
Syne4Q8CII8 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC21.53■■□□□ 1.04
Syne4Q8CII8 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC21.53■■□□□ 1.04
Syne4Q8CII8 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Syne4Q8CII8 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Syne4Q8CII8 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Syne4Q8CII8 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC21.53■■□□□ 1.04
Syne4Q8CII8 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC21.53■■□□□ 1.04
Syne4Q8CII8 Gm43672-201ENSMUST00000199072 1731 ntBASIC21.52■■□□□ 1.04
Syne4Q8CII8 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Syne4Q8CII8 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms