Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trub1Q8C0D0 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trub1Q8C0D0 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Rncr4-201ENSMUST00000194541 2234 ntBASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trub1Q8C0D0 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Trub1Q8C0D0 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
Trub1Q8C0D0 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Trub1Q8C0D0 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trub1Q8C0D0 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
Trub1Q8C0D0 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC19.58■□□□□ 0.72
Trub1Q8C0D0 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trub1Q8C0D0 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC19.58■□□□□ 0.72
Trub1Q8C0D0 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trub1Q8C0D0 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Trub1Q8C0D0 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trub1Q8C0D0 Gm43231-201ENSMUST00000202960 2258 ntBASIC19.58■□□□□ 0.72
Trub1Q8C0D0 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Trub1Q8C0D0 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Trub1Q8C0D0 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC19.57■□□□□ 0.72
Trub1Q8C0D0 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC19.57■□□□□ 0.72
Trub1Q8C0D0 Gm38205-201ENSMUST00000192243 258 ntBASIC19.57■□□□□ 0.72
Trub1Q8C0D0 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Trub1Q8C0D0 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trub1Q8C0D0 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trub1Q8C0D0 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trub1Q8C0D0 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trub1Q8C0D0 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Trub1Q8C0D0 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Trub1Q8C0D0 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Trub1Q8C0D0 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trub1Q8C0D0 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trub1Q8C0D0 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Trub1Q8C0D0 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
Trub1Q8C0D0 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trub1Q8C0D0 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC19.56■□□□□ 0.72
Trub1Q8C0D0 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Trub1Q8C0D0 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC19.56■□□□□ 0.72
Trub1Q8C0D0 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trub1Q8C0D0 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Trub1Q8C0D0 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Trub1Q8C0D0 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC19.56■□□□□ 0.72
Trub1Q8C0D0 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trub1Q8C0D0 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Trub1Q8C0D0 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Trub1Q8C0D0 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC19.56■□□□□ 0.72
Trub1Q8C0D0 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trub1Q8C0D0 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Trub1Q8C0D0 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trub1Q8C0D0 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC19.54■□□□□ 0.72
Trub1Q8C0D0 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trub1Q8C0D0 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms