Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cpsf4Q8BQZ5 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cpsf4Q8BQZ5 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cpsf4Q8BQZ5 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cpsf4Q8BQZ5 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
Cpsf4Q8BQZ5 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Cpsf4Q8BQZ5 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cpsf4Q8BQZ5 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cpsf4Q8BQZ5 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.36■□□□□ 0.53
Cpsf4Q8BQZ5 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Cpsf4Q8BQZ5 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cpsf4Q8BQZ5 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cpsf4Q8BQZ5 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
Cpsf4Q8BQZ5 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Cpsf4Q8BQZ5 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Cpsf4Q8BQZ5 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cpsf4Q8BQZ5 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Cpsf4Q8BQZ5 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Cpsf4Q8BQZ5 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cpsf4Q8BQZ5 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cpsf4Q8BQZ5 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cpsf4Q8BQZ5 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cpsf4Q8BQZ5 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Cpsf4Q8BQZ5 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Cpsf4Q8BQZ5 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Cpsf4Q8BQZ5 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Cpsf4Q8BQZ5 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cpsf4Q8BQZ5 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cpsf4Q8BQZ5 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cpsf4Q8BQZ5 Gm18284-201ENSMUST00000172604 624 ntBASIC18.34■□□□□ 0.53
Cpsf4Q8BQZ5 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cpsf4Q8BQZ5 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Cpsf4Q8BQZ5 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cpsf4Q8BQZ5 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Cpsf4Q8BQZ5 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Cpsf4Q8BQZ5 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Cpsf4Q8BQZ5 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cpsf4Q8BQZ5 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cpsf4Q8BQZ5 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Cpsf4Q8BQZ5 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC18.33■□□□□ 0.52
Cpsf4Q8BQZ5 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC18.33■□□□□ 0.52
Cpsf4Q8BQZ5 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC18.33■□□□□ 0.52
Cpsf4Q8BQZ5 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Cpsf4Q8BQZ5 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cpsf4Q8BQZ5 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cpsf4Q8BQZ5 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cpsf4Q8BQZ5 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cpsf4Q8BQZ5 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cpsf4Q8BQZ5 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cpsf4Q8BQZ5 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cpsf4Q8BQZ5 Gm11421-201ENSMUST00000122124 294 ntBASIC18.32■□□□□ 0.52
Cpsf4Q8BQZ5 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cpsf4Q8BQZ5 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cpsf4Q8BQZ5 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC18.32■□□□□ 0.52
Cpsf4Q8BQZ5 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cpsf4Q8BQZ5 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Cpsf4Q8BQZ5 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
Cpsf4Q8BQZ5 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cpsf4Q8BQZ5 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cpsf4Q8BQZ5 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cpsf4Q8BQZ5 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cpsf4Q8BQZ5 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cpsf4Q8BQZ5 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cpsf4Q8BQZ5 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cpsf4Q8BQZ5 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Cpsf4Q8BQZ5 Golph3-205ENSMUST00000228671 2842 ntBASIC18.31■□□□□ 0.52
Cpsf4Q8BQZ5 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cpsf4Q8BQZ5 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC18.31■□□□□ 0.52
Cpsf4Q8BQZ5 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cpsf4Q8BQZ5 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cpsf4Q8BQZ5 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cpsf4Q8BQZ5 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cpsf4Q8BQZ5 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cpsf4Q8BQZ5 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cpsf4Q8BQZ5 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
Cpsf4Q8BQZ5 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cpsf4Q8BQZ5 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cpsf4Q8BQZ5 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Cpsf4Q8BQZ5 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cpsf4Q8BQZ5 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
Cpsf4Q8BQZ5 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cpsf4Q8BQZ5 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cpsf4Q8BQZ5 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cpsf4Q8BQZ5 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms