Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm10655-201ENSMUST00000098658 1397 ntBASIC22.47■■□□□ 1.19
Trim56Q80VI1 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Trim56Q80VI1 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC22.46■■□□□ 1.19
Trim56Q80VI1 Nespas-201ENSMUST00000143738 1083 ntBASIC22.46■■□□□ 1.19
Trim56Q80VI1 Gm26971-201ENSMUST00000182423 1072 ntBASIC22.46■■□□□ 1.19
Trim56Q80VI1 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC22.46■■□□□ 1.19
Trim56Q80VI1 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC22.46■■□□□ 1.19
Trim56Q80VI1 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
Trim56Q80VI1 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
Trim56Q80VI1 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Trim56Q80VI1 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
Trim56Q80VI1 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
Trim56Q80VI1 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Trim56Q80VI1 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Trim56Q80VI1 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Trim56Q80VI1 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Trim56Q80VI1 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Trim56Q80VI1 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Trim56Q80VI1 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Trim56Q80VI1 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC22.45■■□□□ 1.18
Trim56Q80VI1 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC22.45■■□□□ 1.18
Trim56Q80VI1 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Trim56Q80VI1 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC22.45■■□□□ 1.18
Trim56Q80VI1 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Trim56Q80VI1 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Trim56Q80VI1 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Trim56Q80VI1 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
Trim56Q80VI1 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Trim56Q80VI1 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Trim56Q80VI1 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Trim56Q80VI1 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC22.44■■□□□ 1.18
Trim56Q80VI1 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
Trim56Q80VI1 AC126028.2-201ENSMUST00000228100 1833 ntBASIC22.44■■□□□ 1.18
Trim56Q80VI1 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Trim56Q80VI1 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Trim56Q80VI1 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
Trim56Q80VI1 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Trim56Q80VI1 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Trim56Q80VI1 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
Trim56Q80VI1 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Trim56Q80VI1 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Trim56Q80VI1 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC22.43■■□□□ 1.18
Trim56Q80VI1 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Trim56Q80VI1 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
Trim56Q80VI1 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Trim56Q80VI1 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
Trim56Q80VI1 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
Trim56Q80VI1 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
Trim56Q80VI1 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Trim56Q80VI1 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Trim56Q80VI1 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Trim56Q80VI1 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC22.42■■□□□ 1.18
Trim56Q80VI1 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Trim56Q80VI1 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC22.42■■□□□ 1.18
Trim56Q80VI1 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Trim56Q80VI1 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trim56Q80VI1 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Trim56Q80VI1 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trim56Q80VI1 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Trim56Q80VI1 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC22.41■■□□□ 1.18
Trim56Q80VI1 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trim56Q80VI1 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trim56Q80VI1 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC22.41■■□□□ 1.18
Trim56Q80VI1 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trim56Q80VI1 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trim56Q80VI1 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Trim56Q80VI1 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
Trim56Q80VI1 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
Trim56Q80VI1 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Trim56Q80VI1 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Trim56Q80VI1 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Trim56Q80VI1 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Trim56Q80VI1 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Trim56Q80VI1 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
Trim56Q80VI1 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Trim56Q80VI1 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Trim56Q80VI1 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC22.4■■□□□ 1.18
Trim56Q80VI1 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Trim56Q80VI1 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC22.4■■□□□ 1.18
Trim56Q80VI1 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC22.4■■□□□ 1.18
Trim56Q80VI1 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Trim56Q80VI1 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.18
Trim56Q80VI1 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Trim56Q80VI1 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
Trim56Q80VI1 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Trim56Q80VI1 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.18
Trim56Q80VI1 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Trim56Q80VI1 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Trim56Q80VI1 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
Trim56Q80VI1 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
Trim56Q80VI1 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Trim56Q80VI1 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC22.39■■□□□ 1.17
Trim56Q80VI1 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC22.39■■□□□ 1.17
Trim56Q80VI1 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
Trim56Q80VI1 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Trim56Q80VI1 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC22.38■■□□□ 1.17
Trim56Q80VI1 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Trim56Q80VI1 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Trim56Q80VI1 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Trim56Q80VI1 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms