Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Snrnp40Q6PE01 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Snrnp40Q6PE01 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC16.77■□□□□ 0.28
Snrnp40Q6PE01 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Snrnp40Q6PE01 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Snrnp40Q6PE01 Nrn1-203ENSMUST00000223611 1443 ntBASIC16.77■□□□□ 0.27
Snrnp40Q6PE01 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Snrnp40Q6PE01 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Snrnp40Q6PE01 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Snrnp40Q6PE01 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
Snrnp40Q6PE01 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC16.76■□□□□ 0.27
Snrnp40Q6PE01 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Snrnp40Q6PE01 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC16.76■□□□□ 0.27
Snrnp40Q6PE01 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Snrnp40Q6PE01 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC16.76■□□□□ 0.27
Snrnp40Q6PE01 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
Snrnp40Q6PE01 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC16.76■□□□□ 0.27
Snrnp40Q6PE01 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Snrnp40Q6PE01 AC153881.1-201ENSMUST00000214448 284 ntBASIC16.76■□□□□ 0.27
Snrnp40Q6PE01 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Snrnp40Q6PE01 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Snrnp40Q6PE01 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Snrnp40Q6PE01 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 Gm10698-201ENSMUST00000182663 604 ntBASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 Dmtn-209ENSMUST00000228295 2572 ntBASIC16.75■□□□□ 0.27
Snrnp40Q6PE01 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Snrnp40Q6PE01 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Snrnp40Q6PE01 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Snrnp40Q6PE01 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Snrnp40Q6PE01 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Snrnp40Q6PE01 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
Snrnp40Q6PE01 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Snrnp40Q6PE01 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Snrnp40Q6PE01 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Snrnp40Q6PE01 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Snrnp40Q6PE01 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Snrnp40Q6PE01 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Snrnp40Q6PE01 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Snrnp40Q6PE01 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Snrnp40Q6PE01 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC16.73■□□□□ 0.27
Snrnp40Q6PE01 Gm20634-201ENSMUST00000090779 2956 ntBASIC16.73■□□□□ 0.27
Snrnp40Q6PE01 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Snrnp40Q6PE01 AC152827.1-201ENSMUST00000221143 2189 ntBASIC16.73■□□□□ 0.27
Snrnp40Q6PE01 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC16.73■□□□□ 0.27
Snrnp40Q6PE01 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Snrnp40Q6PE01 Gm15565-201ENSMUST00000118890 427 ntBASIC16.73■□□□□ 0.27
Snrnp40Q6PE01 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Snrnp40Q6PE01 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Snrnp40Q6PE01 Gm20100-201ENSMUST00000209418 2272 ntBASIC16.73■□□□□ 0.27
Snrnp40Q6PE01 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC16.73■□□□□ 0.27
Snrnp40Q6PE01 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Snrnp40Q6PE01 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC16.73■□□□□ 0.27
Snrnp40Q6PE01 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Snrnp40Q6PE01 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Snrnp40Q6PE01 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Snrnp40Q6PE01 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Snrnp40Q6PE01 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Snrnp40Q6PE01 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Snrnp40Q6PE01 Gm2399-201ENSMUST00000104944 225 ntBASIC16.72■□□□□ 0.27
Snrnp40Q6PE01 Gm15378-201ENSMUST00000121894 207 ntBASIC16.72■□□□□ 0.27
Snrnp40Q6PE01 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Snrnp40Q6PE01 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Snrnp40Q6PE01 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Snrnp40Q6PE01 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Snrnp40Q6PE01 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Snrnp40Q6PE01 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Snrnp40Q6PE01 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Snrnp40Q6PE01 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Snrnp40Q6PE01 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Snrnp40Q6PE01 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Snrnp40Q6PE01 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Snrnp40Q6PE01 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Snrnp40Q6PE01 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Snrnp40Q6PE01 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Snrnp40Q6PE01 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC16.71■□□□□ 0.26
Snrnp40Q6PE01 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Snrnp40Q6PE01 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms