Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Shkbp1Q6P7W2 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC19.85■□□□□ 0.77
Shkbp1Q6P7W2 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Shkbp1Q6P7W2 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Shkbp1Q6P7W2 Gm27275-201ENSMUST00000184318 272 ntBASIC19.85■□□□□ 0.77
Shkbp1Q6P7W2 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC19.85■□□□□ 0.77
Shkbp1Q6P7W2 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Shkbp1Q6P7W2 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Shkbp1Q6P7W2 Gm45640-201ENSMUST00000210665 1896 ntBASIC19.85■□□□□ 0.77
Shkbp1Q6P7W2 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Shkbp1Q6P7W2 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Shkbp1Q6P7W2 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Shkbp1Q6P7W2 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Shkbp1Q6P7W2 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Shkbp1Q6P7W2 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Shkbp1Q6P7W2 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Shkbp1Q6P7W2 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Shkbp1Q6P7W2 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC19.84■□□□□ 0.77
Shkbp1Q6P7W2 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.84■□□□□ 0.77
Shkbp1Q6P7W2 Gm10252-201ENSMUST00000209541 832 ntBASIC19.84■□□□□ 0.77
Shkbp1Q6P7W2 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC19.84■□□□□ 0.77
Shkbp1Q6P7W2 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Shkbp1Q6P7W2 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Shkbp1Q6P7W2 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Shkbp1Q6P7W2 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Shkbp1Q6P7W2 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Shkbp1Q6P7W2 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC19.84■□□□□ 0.77
Shkbp1Q6P7W2 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Shkbp1Q6P7W2 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Shkbp1Q6P7W2 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Shkbp1Q6P7W2 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Shkbp1Q6P7W2 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
Shkbp1Q6P7W2 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Shkbp1Q6P7W2 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC19.83■□□□□ 0.77
Shkbp1Q6P7W2 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC19.83■□□□□ 0.77
Shkbp1Q6P7W2 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Shkbp1Q6P7W2 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC19.83■□□□□ 0.77
Shkbp1Q6P7W2 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Shkbp1Q6P7W2 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Shkbp1Q6P7W2 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Shkbp1Q6P7W2 Gm12896-201ENSMUST00000118430 226 ntBASIC19.82■□□□□ 0.76
Shkbp1Q6P7W2 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Shkbp1Q6P7W2 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Shkbp1Q6P7W2 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC19.82■□□□□ 0.76
Shkbp1Q6P7W2 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC19.82■□□□□ 0.76
Shkbp1Q6P7W2 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Shkbp1Q6P7W2 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Shkbp1Q6P7W2 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Shkbp1Q6P7W2 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Shkbp1Q6P7W2 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Shkbp1Q6P7W2 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Shkbp1Q6P7W2 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Shkbp1Q6P7W2 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Shkbp1Q6P7W2 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Shkbp1Q6P7W2 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Shkbp1Q6P7W2 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Shkbp1Q6P7W2 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Shkbp1Q6P7W2 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Shkbp1Q6P7W2 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Shkbp1Q6P7W2 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Shkbp1Q6P7W2 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Shkbp1Q6P7W2 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.81■□□□□ 0.76
Shkbp1Q6P7W2 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.8■□□□□ 0.76
Shkbp1Q6P7W2 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Shkbp1Q6P7W2 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC19.8■□□□□ 0.76
Shkbp1Q6P7W2 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Shkbp1Q6P7W2 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC19.8■□□□□ 0.76
Shkbp1Q6P7W2 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Shkbp1Q6P7W2 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Shkbp1Q6P7W2 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Shkbp1Q6P7W2 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Shkbp1Q6P7W2 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Shkbp1Q6P7W2 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.8■□□□□ 0.76
Shkbp1Q6P7W2 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Shkbp1Q6P7W2 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Shkbp1Q6P7W2 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Shkbp1Q6P7W2 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Shkbp1Q6P7W2 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.79■□□□□ 0.76
Shkbp1Q6P7W2 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Shkbp1Q6P7W2 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Shkbp1Q6P7W2 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Shkbp1Q6P7W2 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Shkbp1Q6P7W2 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Shkbp1Q6P7W2 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Shkbp1Q6P7W2 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Shkbp1Q6P7W2 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Shkbp1Q6P7W2 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Shkbp1Q6P7W2 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC19.78■□□□□ 0.76
Shkbp1Q6P7W2 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Shkbp1Q6P7W2 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Shkbp1Q6P7W2 Gm10812-201ENSMUST00000099864 546 ntBASIC19.78■□□□□ 0.76
Shkbp1Q6P7W2 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Shkbp1Q6P7W2 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Shkbp1Q6P7W2 Gm37352-201ENSMUST00000193908 2181 ntBASIC19.77■□□□□ 0.76
Shkbp1Q6P7W2 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Shkbp1Q6P7W2 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.77■□□□□ 0.76
Shkbp1Q6P7W2 Gm19094-201ENSMUST00000209791 1246 ntBASIC19.77■□□□□ 0.76
Shkbp1Q6P7W2 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.77■□□□□ 0.76
Shkbp1Q6P7W2 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Shkbp1Q6P7W2 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms