Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Six3Q62233 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Six3Q62233 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Six3Q62233 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC18.52■□□□□ 0.56
Six3Q62233 Gm43173-201ENSMUST00000202246 593 ntBASIC18.52■□□□□ 0.56
Six3Q62233 Wdr70-203ENSMUST00000227371 1130 ntBASIC18.52■□□□□ 0.56
Six3Q62233 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
Six3Q62233 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Six3Q62233 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
Six3Q62233 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Six3Q62233 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Six3Q62233 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
Six3Q62233 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Six3Q62233 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Six3Q62233 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Six3Q62233 Gm9885-202ENSMUST00000186234 2209 ntBASIC18.51■□□□□ 0.55
Six3Q62233 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Six3Q62233 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Six3Q62233 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Six3Q62233 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Six3Q62233 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Six3Q62233 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Six3Q62233 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC18.51■□□□□ 0.55
Six3Q62233 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Six3Q62233 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Six3Q62233 Gm5540-201ENSMUST00000131852 1848 ntBASIC18.51■□□□□ 0.55
Six3Q62233 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Six3Q62233 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Six3Q62233 Gm27454-201ENSMUST00000185090 204 ntBASIC18.5■□□□□ 0.55
Six3Q62233 Gm8493-201ENSMUST00000196881 489 ntBASIC18.5■□□□□ 0.55
Six3Q62233 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Six3Q62233 Gm6627-201ENSMUST00000218299 2386 ntBASIC18.5■□□□□ 0.55
Six3Q62233 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Six3Q62233 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Six3Q62233 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Six3Q62233 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Six3Q62233 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Six3Q62233 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Six3Q62233 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Six3Q62233 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
Six3Q62233 Gm11421-201ENSMUST00000122124 294 ntBASIC18.49■□□□□ 0.55
Six3Q62233 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC18.49■□□□□ 0.55
Six3Q62233 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
Six3Q62233 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Six3Q62233 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Six3Q62233 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Six3Q62233 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Six3Q62233 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six3Q62233 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six3Q62233 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Six3Q62233 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six3Q62233 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six3Q62233 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six3Q62233 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC18.48■□□□□ 0.55
Six3Q62233 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Six3Q62233 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Six3Q62233 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six3Q62233 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Six3Q62233 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six3Q62233 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six3Q62233 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Six3Q62233 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Six3Q62233 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC18.47■□□□□ 0.55
Six3Q62233 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Six3Q62233 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Six3Q62233 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Six3Q62233 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Six3Q62233 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC18.47■□□□□ 0.55
Six3Q62233 AC137127.1-201ENSMUST00000213466 1078 ntBASIC18.47■□□□□ 0.55
Six3Q62233 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Six3Q62233 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Six3Q62233 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Six3Q62233 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Six3Q62233 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Six3Q62233 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Six3Q62233 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Six3Q62233 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
Six3Q62233 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Six3Q62233 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Six3Q62233 Gm12821-201ENSMUST00000120022 600 ntBASIC18.46■□□□□ 0.55
Six3Q62233 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Six3Q62233 Appbp2os-202ENSMUST00000206972 447 ntBASIC18.46■□□□□ 0.55
Six3Q62233 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC18.46■□□□□ 0.55
Six3Q62233 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Six3Q62233 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Six3Q62233 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
Six3Q62233 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Six3Q62233 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC18.46■□□□□ 0.54
Six3Q62233 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Six3Q62233 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Six3Q62233 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
Six3Q62233 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Six3Q62233 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Six3Q62233 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
Six3Q62233 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC18.45■□□□□ 0.54
Six3Q62233 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Six3Q62233 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Six3Q62233 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Six3Q62233 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Six3Q62233 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms