Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col11a1Q61245 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col11a1Q61245 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Col11a1Q61245 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Col11a1Q61245 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Col11a1Q61245 Gm32699-201ENSMUST00000221728 1988 ntBASIC21.61■■□□□ 1.05
Col11a1Q61245 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col11a1Q61245 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Col11a1Q61245 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
Col11a1Q61245 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col11a1Q61245 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Col11a1Q61245 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Col11a1Q61245 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col11a1Q61245 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
Col11a1Q61245 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
Col11a1Q61245 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Col11a1Q61245 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col11a1Q61245 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
Col11a1Q61245 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col11a1Q61245 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col11a1Q61245 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col11a1Q61245 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Col11a1Q61245 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Col11a1Q61245 Gm11927-201ENSMUST00000118472 759 ntBASIC21.59■■□□□ 1.05
Col11a1Q61245 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC21.59■■□□□ 1.05
Col11a1Q61245 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
Col11a1Q61245 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col11a1Q61245 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
Col11a1Q61245 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col11a1Q61245 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col11a1Q61245 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col11a1Q61245 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC21.58■■□□□ 1.05
Col11a1Q61245 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col11a1Q61245 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Col11a1Q61245 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Col11a1Q61245 Snhg20-203ENSMUST00000182811 2153 ntBASIC21.57■■□□□ 1.04
Col11a1Q61245 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC21.57■■□□□ 1.04
Col11a1Q61245 Gm12504-201ENSMUST00000120860 2231 ntBASIC21.57■■□□□ 1.04
Col11a1Q61245 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Col11a1Q61245 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC21.57■■□□□ 1.04
Col11a1Q61245 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Col11a1Q61245 Wnt10b-205ENSMUST00000226846 1204 ntBASIC21.57■■□□□ 1.04
Col11a1Q61245 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC21.57■■□□□ 1.04
Col11a1Q61245 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col11a1Q61245 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Col11a1Q61245 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col11a1Q61245 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col11a1Q61245 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col11a1Q61245 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC21.57■■□□□ 1.04
Col11a1Q61245 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Col11a1Q61245 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC21.56■■□□□ 1.04
Col11a1Q61245 Gm19094-201ENSMUST00000209791 1246 ntBASIC21.56■■□□□ 1.04
Col11a1Q61245 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col11a1Q61245 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Col11a1Q61245 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col11a1Q61245 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col11a1Q61245 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Col11a1Q61245 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC21.55■■□□□ 1.04
Col11a1Q61245 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Col11a1Q61245 Gm16042-201ENSMUST00000204813 1247 ntBASIC21.55■■□□□ 1.04
Col11a1Q61245 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col11a1Q61245 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col11a1Q61245 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC21.55■■□□□ 1.04
Col11a1Q61245 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
Col11a1Q61245 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC21.55■■□□□ 1.04
Col11a1Q61245 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col11a1Q61245 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col11a1Q61245 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Col11a1Q61245 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC21.55■■□□□ 1.04
Col11a1Q61245 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col11a1Q61245 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
Col11a1Q61245 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC21.55■■□□□ 1.04
Col11a1Q61245 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col11a1Q61245 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Col11a1Q61245 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Col11a1Q61245 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Col11a1Q61245 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col11a1Q61245 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col11a1Q61245 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Col11a1Q61245 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Col11a1Q61245 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC21.54■■□□□ 1.04
Col11a1Q61245 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col11a1Q61245 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Col11a1Q61245 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col11a1Q61245 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col11a1Q61245 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col11a1Q61245 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col11a1Q61245 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col11a1Q61245 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Col11a1Q61245 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Col11a1Q61245 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC21.53■■□□□ 1.04
Col11a1Q61245 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col11a1Q61245 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col11a1Q61245 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col11a1Q61245 AC152827.1-201ENSMUST00000221143 2189 ntBASIC21.53■■□□□ 1.04
Col11a1Q61245 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Col11a1Q61245 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col11a1Q61245 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Col11a1Q61245 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col11a1Q61245 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC21.52■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms