Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3aQ3ULJ3 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3aQ3ULJ3 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3aQ3ULJ3 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3aQ3ULJ3 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3aQ3ULJ3 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3aQ3ULJ3 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3aQ3ULJ3 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3aQ3ULJ3 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3aQ3ULJ3 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.04■□□□□ 0.8
Upf3aQ3ULJ3 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Upf3aQ3ULJ3 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3aQ3ULJ3 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Upf3aQ3ULJ3 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3aQ3ULJ3 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf3aQ3ULJ3 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upf3aQ3ULJ3 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Upf3aQ3ULJ3 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Upf3aQ3ULJ3 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Upf3aQ3ULJ3 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Upf3aQ3ULJ3 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.03■□□□□ 0.8
Upf3aQ3ULJ3 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upf3aQ3ULJ3 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upf3aQ3ULJ3 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC20.03■□□□□ 0.8
Upf3aQ3ULJ3 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Upf3aQ3ULJ3 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upf3aQ3ULJ3 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Upf3aQ3ULJ3 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Upf3aQ3ULJ3 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Upf3aQ3ULJ3 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
Upf3aQ3ULJ3 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Upf3aQ3ULJ3 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC20.02■□□□□ 0.8
Upf3aQ3ULJ3 Gm5643-201ENSMUST00000117081 966 ntBASIC20.02■□□□□ 0.8
Upf3aQ3ULJ3 Gm2559-201ENSMUST00000201323 363 ntBASIC20.02■□□□□ 0.8
Upf3aQ3ULJ3 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Upf3aQ3ULJ3 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Upf3aQ3ULJ3 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Upf3aQ3ULJ3 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Upf3aQ3ULJ3 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
Upf3aQ3ULJ3 Dio3-201ENSMUST00000097228 1449 ntBASIC20.02■□□□□ 0.79
Upf3aQ3ULJ3 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3aQ3ULJ3 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3aQ3ULJ3 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3aQ3ULJ3 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3aQ3ULJ3 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Upf3aQ3ULJ3 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3aQ3ULJ3 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC20.01■□□□□ 0.79
Upf3aQ3ULJ3 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3aQ3ULJ3 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3aQ3ULJ3 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf3aQ3ULJ3 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC20■□□□□ 0.79
Upf3aQ3ULJ3 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20■□□□□ 0.79
Upf3aQ3ULJ3 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20■□□□□ 0.79
Upf3aQ3ULJ3 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Upf3aQ3ULJ3 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Upf3aQ3ULJ3 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.99■□□□□ 0.79
Upf3aQ3ULJ3 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC19.99■□□□□ 0.79
Upf3aQ3ULJ3 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3aQ3ULJ3 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Upf3aQ3ULJ3 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3aQ3ULJ3 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3aQ3ULJ3 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3aQ3ULJ3 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3aQ3ULJ3 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3aQ3ULJ3 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3aQ3ULJ3 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3aQ3ULJ3 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Upf3aQ3ULJ3 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upf3aQ3ULJ3 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upf3aQ3ULJ3 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Upf3aQ3ULJ3 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upf3aQ3ULJ3 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upf3aQ3ULJ3 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC19.98■□□□□ 0.79
Upf3aQ3ULJ3 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Upf3aQ3ULJ3 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Upf3aQ3ULJ3 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Upf3aQ3ULJ3 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3aQ3ULJ3 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3aQ3ULJ3 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3aQ3ULJ3 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3aQ3ULJ3 Mir7071-201ENSMUST00000184847 69 ntBASIC19.97■□□□□ 0.79
Upf3aQ3ULJ3 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC19.97■□□□□ 0.79
Upf3aQ3ULJ3 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3aQ3ULJ3 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3aQ3ULJ3 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3aQ3ULJ3 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3aQ3ULJ3 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3aQ3ULJ3 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Upf3aQ3ULJ3 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Upf3aQ3ULJ3 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Upf3aQ3ULJ3 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC19.96■□□□□ 0.79
Upf3aQ3ULJ3 Gm44549-201ENSMUST00000208351 577 ntBASIC19.96■□□□□ 0.79
Upf3aQ3ULJ3 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Upf3aQ3ULJ3 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Upf3aQ3ULJ3 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Upf3aQ3ULJ3 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Upf3aQ3ULJ3 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC19.95■□□□□ 0.78
Upf3aQ3ULJ3 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.95■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms