Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Rarb-207ENSMUST00000225921 2756 ntBASIC18.35■□□□□ 0.53
Col28a1Q2UY11 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col28a1Q2UY11 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC18.35■□□□□ 0.53
Col28a1Q2UY11 Gm10657-201ENSMUST00000193528 1031 ntBASIC18.35■□□□□ 0.53
Col28a1Q2UY11 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col28a1Q2UY11 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col28a1Q2UY11 Gm37352-201ENSMUST00000193908 2181 ntBASIC18.35■□□□□ 0.53
Col28a1Q2UY11 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col28a1Q2UY11 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Col28a1Q2UY11 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col28a1Q2UY11 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC18.34■□□□□ 0.53
Col28a1Q2UY11 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Col28a1Q2UY11 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC18.34■□□□□ 0.53
Col28a1Q2UY11 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col28a1Q2UY11 Gm18284-201ENSMUST00000172604 624 ntBASIC18.34■□□□□ 0.53
Col28a1Q2UY11 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col28a1Q2UY11 Gm9870-201ENSMUST00000063874 645 ntBASIC18.34■□□□□ 0.53
Col28a1Q2UY11 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col28a1Q2UY11 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Col28a1Q2UY11 Gm5540-201ENSMUST00000131852 1848 ntBASIC18.34■□□□□ 0.53
Col28a1Q2UY11 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col28a1Q2UY11 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col28a1Q2UY11 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col28a1Q2UY11 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col28a1Q2UY11 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Col28a1Q2UY11 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col28a1Q2UY11 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col28a1Q2UY11 Gm43182-201ENSMUST00000199476 2528 ntBASIC18.33■□□□□ 0.53
Col28a1Q2UY11 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col28a1Q2UY11 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col28a1Q2UY11 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC18.33■□□□□ 0.53
Col28a1Q2UY11 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col28a1Q2UY11 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col28a1Q2UY11 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Col28a1Q2UY11 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Col28a1Q2UY11 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col28a1Q2UY11 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col28a1Q2UY11 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Col28a1Q2UY11 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col28a1Q2UY11 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Col28a1Q2UY11 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col28a1Q2UY11 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC18.33■□□□□ 0.52
Col28a1Q2UY11 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col28a1Q2UY11 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Gm5953-201ENSMUST00000220644 2616 ntBASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col28a1Q2UY11 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col28a1Q2UY11 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC18.31■□□□□ 0.52
Col28a1Q2UY11 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col28a1Q2UY11 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col28a1Q2UY11 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Col28a1Q2UY11 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col28a1Q2UY11 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col28a1Q2UY11 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC18.31■□□□□ 0.52
Col28a1Q2UY11 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col28a1Q2UY11 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Col28a1Q2UY11 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Col28a1Q2UY11 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
Col28a1Q2UY11 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC18.31■□□□□ 0.52
Col28a1Q2UY11 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col28a1Q2UY11 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
Col28a1Q2UY11 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col28a1Q2UY11 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col28a1Q2UY11 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col28a1Q2UY11 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col28a1Q2UY11 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC18.3■□□□□ 0.52
Col28a1Q2UY11 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC18.3■□□□□ 0.52
Col28a1Q2UY11 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Col28a1Q2UY11 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC18.3■□□□□ 0.52
Col28a1Q2UY11 Gm2011-201ENSMUST00000203124 1263 ntBASIC18.3■□□□□ 0.52
Col28a1Q2UY11 Gm6139-201ENSMUST00000079261 882 ntBASIC18.3■□□□□ 0.52
Col28a1Q2UY11 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col28a1Q2UY11 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.3■□□□□ 0.52
Col28a1Q2UY11 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col28a1Q2UY11 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col28a1Q2UY11 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col28a1Q2UY11 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col28a1Q2UY11 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col28a1Q2UY11 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col28a1Q2UY11 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col28a1Q2UY11 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col28a1Q2UY11 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms