Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Shox2P70390 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Shox2P70390 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Shox2P70390 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Shox2P70390 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Shox2P70390 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Shox2P70390 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC18.82■□□□□ 0.6
Shox2P70390 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Shox2P70390 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Shox2P70390 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Shox2P70390 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC18.82■□□□□ 0.6
Shox2P70390 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Shox2P70390 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Shox2P70390 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Shox2P70390 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Shox2P70390 Gm15635-204ENSMUST00000208024 2539 ntBASIC18.81■□□□□ 0.6
Shox2P70390 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shox2P70390 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC18.81■□□□□ 0.6
Shox2P70390 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shox2P70390 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shox2P70390 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shox2P70390 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC18.81■□□□□ 0.6
Shox2P70390 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC18.81■□□□□ 0.6
Shox2P70390 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Shox2P70390 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shox2P70390 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shox2P70390 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Shox2P70390 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shox2P70390 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shox2P70390 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
Shox2P70390 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shox2P70390 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shox2P70390 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shox2P70390 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shox2P70390 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shox2P70390 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shox2P70390 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Shox2P70390 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Shox2P70390 Fcho2-208ENSMUST00000224992 2964 ntBASIC18.79■□□□□ 0.6
Shox2P70390 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Shox2P70390 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Shox2P70390 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC18.79■□□□□ 0.6
Shox2P70390 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
Shox2P70390 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Shox2P70390 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Shox2P70390 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Shox2P70390 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Shox2P70390 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC18.78■□□□□ 0.6
Shox2P70390 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Shox2P70390 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Shox2P70390 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Shox2P70390 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Shox2P70390 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Shox2P70390 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC18.78■□□□□ 0.6
Shox2P70390 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
Shox2P70390 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Shox2P70390 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Shox2P70390 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Shox2P70390 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC18.77■□□□□ 0.6
Shox2P70390 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Shox2P70390 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Shox2P70390 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.59
Shox2P70390 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
Shox2P70390 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Shox2P70390 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Shox2P70390 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shox2P70390 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shox2P70390 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shox2P70390 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shox2P70390 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shox2P70390 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC18.76■□□□□ 0.59
Shox2P70390 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shox2P70390 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shox2P70390 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shox2P70390 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shox2P70390 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Shox2P70390 Zcchc6-207ENSMUST00000225576 2499 ntBASIC18.76■□□□□ 0.59
Shox2P70390 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Shox2P70390 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Shox2P70390 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Shox2P70390 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
Shox2P70390 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Shox2P70390 Gm6085-201ENSMUST00000182774 1470 ntBASIC18.75■□□□□ 0.59
Shox2P70390 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Shox2P70390 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Shox2P70390 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Shox2P70390 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18.75■□□□□ 0.59
Shox2P70390 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Shox2P70390 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Shox2P70390 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shox2P70390 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shox2P70390 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC18.74■□□□□ 0.59
Shox2P70390 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC18.74■□□□□ 0.59
Shox2P70390 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shox2P70390 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shox2P70390 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Shox2P70390 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shox2P70390 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Shox2P70390 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
Shox2P70390 Gm45244-201ENSMUST00000211328 2200 ntBASIC18.73■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms