Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Msx3P70354 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Msx3P70354 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Msx3P70354 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Msx3P70354 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Msx3P70354 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Msx3P70354 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Msx3P70354 Golph3-205ENSMUST00000228671 2842 ntBASIC19.49■□□□□ 0.71
Msx3P70354 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Msx3P70354 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Msx3P70354 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Msx3P70354 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Msx3P70354 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Msx3P70354 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Msx3P70354 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC19.48■□□□□ 0.71
Msx3P70354 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Msx3P70354 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Msx3P70354 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Msx3P70354 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Msx3P70354 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Msx3P70354 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Msx3P70354 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Msx3P70354 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Msx3P70354 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Msx3P70354 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Msx3P70354 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Msx3P70354 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Msx3P70354 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Msx3P70354 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Msx3P70354 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msx3P70354 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.47■□□□□ 0.71
Msx3P70354 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msx3P70354 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC19.47■□□□□ 0.71
Msx3P70354 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msx3P70354 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msx3P70354 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Msx3P70354 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Msx3P70354 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msx3P70354 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msx3P70354 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msx3P70354 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msx3P70354 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Msx3P70354 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
Msx3P70354 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Msx3P70354 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Msx3P70354 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Msx3P70354 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Msx3P70354 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC19.46■□□□□ 0.71
Msx3P70354 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
Msx3P70354 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
Msx3P70354 Cdc34b-202ENSMUST00000188741 1252 ntBASIC19.46■□□□□ 0.71
Msx3P70354 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Msx3P70354 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Msx3P70354 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Msx3P70354 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Msx3P70354 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Msx3P70354 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC19.46■□□□□ 0.71
Msx3P70354 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Msx3P70354 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msx3P70354 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msx3P70354 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msx3P70354 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Msx3P70354 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Msx3P70354 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msx3P70354 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.45■□□□□ 0.7
Msx3P70354 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Msx3P70354 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msx3P70354 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msx3P70354 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msx3P70354 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Msx3P70354 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msx3P70354 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Msx3P70354 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Msx3P70354 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC19.44■□□□□ 0.7
Msx3P70354 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Msx3P70354 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Msx3P70354 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC19.44■□□□□ 0.7
Msx3P70354 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msx3P70354 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Msx3P70354 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msx3P70354 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC19.43■□□□□ 0.7
Msx3P70354 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Msx3P70354 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC19.43■□□□□ 0.7
Msx3P70354 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.43■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms