Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Cxcl12P40224 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cxcl12P40224 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Cxcl12P40224 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cxcl12P40224 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC19.69■□□□□ 0.74
Cxcl12P40224 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
Cxcl12P40224 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cxcl12P40224 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cxcl12P40224 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Cxcl12P40224 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC19.69■□□□□ 0.74
Cxcl12P40224 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cxcl12P40224 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC19.69■□□□□ 0.74
Cxcl12P40224 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cxcl12P40224 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Cxcl12P40224 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.69■□□□□ 0.74
Cxcl12P40224 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cxcl12P40224 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cxcl12P40224 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cxcl12P40224 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cxcl12P40224 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC19.68■□□□□ 0.74
Cxcl12P40224 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC19.68■□□□□ 0.74
Cxcl12P40224 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cxcl12P40224 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cxcl12P40224 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cxcl12P40224 AC163280.1-201ENSMUST00000228194 1100 ntBASIC19.68■□□□□ 0.74
Cxcl12P40224 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cxcl12P40224 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Cxcl12P40224 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cxcl12P40224 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Cxcl12P40224 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cxcl12P40224 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cxcl12P40224 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cxcl12P40224 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Cxcl12P40224 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cxcl12P40224 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cxcl12P40224 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cxcl12P40224 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cxcl12P40224 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cxcl12P40224 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cxcl12P40224 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cxcl12P40224 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cxcl12P40224 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cxcl12P40224 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cxcl12P40224 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Cxcl12P40224 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Cxcl12P40224 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cxcl12P40224 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cxcl12P40224 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC19.66■□□□□ 0.74
Cxcl12P40224 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Cxcl12P40224 Gm10819-201ENSMUST00000099988 561 ntBASIC19.66■□□□□ 0.74
Cxcl12P40224 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cxcl12P40224 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Cxcl12P40224 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cxcl12P40224 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Cxcl12P40224 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Cxcl12P40224 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Cxcl12P40224 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cxcl12P40224 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Cxcl12P40224 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cxcl12P40224 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cxcl12P40224 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cxcl12P40224 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cxcl12P40224 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Cxcl12P40224 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
Cxcl12P40224 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC19.64■□□□□ 0.74
Cxcl12P40224 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Cxcl12P40224 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
Cxcl12P40224 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cxcl12P40224 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cxcl12P40224 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cxcl12P40224 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cxcl12P40224 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cxcl12P40224 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cxcl12P40224 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cxcl12P40224 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
Cxcl12P40224 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
Cxcl12P40224 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC19.63■□□□□ 0.73
Cxcl12P40224 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC19.63■□□□□ 0.73
Cxcl12P40224 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Cxcl12P40224 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cxcl12P40224 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cxcl12P40224 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Cxcl12P40224 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC19.62■□□□□ 0.73
Cxcl12P40224 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cxcl12P40224 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cxcl12P40224 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cxcl12P40224 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cxcl12P40224 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cxcl12P40224 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC19.62■□□□□ 0.73
Cxcl12P40224 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC19.62■□□□□ 0.73
Cxcl12P40224 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC19.62■□□□□ 0.73
Cxcl12P40224 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cxcl12P40224 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Cxcl12P40224 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Cxcl12P40224 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Cxcl12P40224 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Cxcl12P40224 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cxcl12P40224 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Cxcl12P40224 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cxcl12P40224 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms