Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp4P35123 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp4P35123 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp4P35123 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC19.83■□□□□ 0.77
Usp4P35123 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp4P35123 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp4P35123 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp4P35123 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp4P35123 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Usp4P35123 Gm27045-201ENSMUST00000182145 1402 ntBASIC19.83■□□□□ 0.76
Usp4P35123 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp4P35123 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp4P35123 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp4P35123 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Usp4P35123 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp4P35123 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Usp4P35123 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp4P35123 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp4P35123 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp4P35123 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Usp4P35123 Dmtn-210ENSMUST00000228824 2377 ntBASIC19.82■□□□□ 0.76
Usp4P35123 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Usp4P35123 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC19.82■□□□□ 0.76
Usp4P35123 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC19.82■□□□□ 0.76
Usp4P35123 AC154266.1-201ENSMUST00000223190 503 ntBASIC19.82■□□□□ 0.76
Usp4P35123 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp4P35123 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC19.82■□□□□ 0.76
Usp4P35123 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp4P35123 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp4P35123 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp4P35123 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp4P35123 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC19.81■□□□□ 0.76
Usp4P35123 Gm32699-201ENSMUST00000221728 1988 ntBASIC19.81■□□□□ 0.76
Usp4P35123 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
Usp4P35123 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC19.81■□□□□ 0.76
Usp4P35123 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp4P35123 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp4P35123 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.81■□□□□ 0.76
Usp4P35123 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp4P35123 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp4P35123 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp4P35123 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC19.8■□□□□ 0.76
Usp4P35123 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp4P35123 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp4P35123 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp4P35123 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp4P35123 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp4P35123 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC19.8■□□□□ 0.76
Usp4P35123 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Usp4P35123 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp4P35123 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Usp4P35123 Gm43137-201ENSMUST00000198052 594 ntBASIC19.8■□□□□ 0.76
Usp4P35123 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp4P35123 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Usp4P35123 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp4P35123 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp4P35123 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Usp4P35123 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp4P35123 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Usp4P35123 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp4P35123 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp4P35123 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp4P35123 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Usp4P35123 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp4P35123 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
Usp4P35123 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp4P35123 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC19.79■□□□□ 0.76
Usp4P35123 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC19.79■□□□□ 0.76
Usp4P35123 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Usp4P35123 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp4P35123 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp4P35123 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Usp4P35123 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp4P35123 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp4P35123 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp4P35123 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Usp4P35123 Gm8495-201ENSMUST00000188740 694 ntBASIC19.78■□□□□ 0.76
Usp4P35123 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp4P35123 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp4P35123 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp4P35123 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp4P35123 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp4P35123 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp4P35123 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp4P35123 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Usp4P35123 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Usp4P35123 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC19.77■□□□□ 0.76
Usp4P35123 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp4P35123 Gm10571-201ENSMUST00000097869 1638 ntBASIC19.77■□□□□ 0.76
Usp4P35123 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp4P35123 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp4P35123 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usp4P35123 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC19.77■□□□□ 0.76
Usp4P35123 Gm6139-201ENSMUST00000079261 882 ntBASIC19.77■□□□□ 0.76
Usp4P35123 Gm44832-201ENSMUST00000208849 2303 ntBASIC19.77■□□□□ 0.76
Usp4P35123 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Usp4P35123 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp4P35123 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Usp4P35123 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usp4P35123 Gm45141-201ENSMUST00000206502 1888 ntBASIC19.76■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms