Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Chmp6P0C0A3 Gm18284-201ENSMUST00000172604 624 ntBASIC20.58■□□□□ 0.89
Chmp6P0C0A3 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.58■□□□□ 0.89
Chmp6P0C0A3 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Chmp6P0C0A3 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Chmp6P0C0A3 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Chmp6P0C0A3 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Chmp6P0C0A3 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Chmp6P0C0A3 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Chmp6P0C0A3 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Chmp6P0C0A3 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Chmp6P0C0A3 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Chmp6P0C0A3 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Chmp6P0C0A3 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Chmp6P0C0A3 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC20.57■□□□□ 0.88
Chmp6P0C0A3 Gm10493-201ENSMUST00000097270 612 ntBASIC20.57■□□□□ 0.88
Chmp6P0C0A3 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Chmp6P0C0A3 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Chmp6P0C0A3 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Chmp6P0C0A3 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Chmp6P0C0A3 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Chmp6P0C0A3 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Chmp6P0C0A3 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC20.56■□□□□ 0.88
Chmp6P0C0A3 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Chmp6P0C0A3 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Chmp6P0C0A3 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Chmp6P0C0A3 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Chmp6P0C0A3 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Chmp6P0C0A3 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.56■□□□□ 0.88
Chmp6P0C0A3 AC099934.2-201ENSMUST00000196389 70 ntBASIC20.56■□□□□ 0.88
Chmp6P0C0A3 AC156953.1-201ENSMUST00000196953 70 ntBASIC20.56■□□□□ 0.88
Chmp6P0C0A3 AC157822.2-201ENSMUST00000200291 70 ntBASIC20.56■□□□□ 0.88
Chmp6P0C0A3 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Chmp6P0C0A3 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Chmp6P0C0A3 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Chmp6P0C0A3 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Chmp6P0C0A3 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Chmp6P0C0A3 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Chmp6P0C0A3 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Chmp6P0C0A3 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Chmp6P0C0A3 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Chmp6P0C0A3 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Chmp6P0C0A3 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Chmp6P0C0A3 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Chmp6P0C0A3 Gm10129-202ENSMUST00000193100 1316 ntBASIC20.54■□□□□ 0.88
Chmp6P0C0A3 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Chmp6P0C0A3 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Chmp6P0C0A3 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC20.54■□□□□ 0.88
Chmp6P0C0A3 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Chmp6P0C0A3 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Chmp6P0C0A3 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Chmp6P0C0A3 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Chmp6P0C0A3 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Chmp6P0C0A3 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Chmp6P0C0A3 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Chmp6P0C0A3 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Chmp6P0C0A3 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Chmp6P0C0A3 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Chmp6P0C0A3 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Chmp6P0C0A3 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Chmp6P0C0A3 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Chmp6P0C0A3 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC20.53■□□□□ 0.88
Chmp6P0C0A3 Gm42778-201ENSMUST00000199644 553 ntBASIC20.53■□□□□ 0.88
Chmp6P0C0A3 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Chmp6P0C0A3 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Chmp6P0C0A3 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Chmp6P0C0A3 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Chmp6P0C0A3 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Chmp6P0C0A3 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Chmp6P0C0A3 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Chmp6P0C0A3 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.52■□□□□ 0.88
Chmp6P0C0A3 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC20.52■□□□□ 0.88
Chmp6P0C0A3 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Chmp6P0C0A3 Gm8495-201ENSMUST00000188740 694 ntBASIC20.52■□□□□ 0.88
Chmp6P0C0A3 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Chmp6P0C0A3 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Chmp6P0C0A3 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Chmp6P0C0A3 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Chmp6P0C0A3 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
Chmp6P0C0A3 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Chmp6P0C0A3 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Chmp6P0C0A3 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Chmp6P0C0A3 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Chmp6P0C0A3 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Chmp6P0C0A3 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC20.51■□□□□ 0.87
Chmp6P0C0A3 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.51■□□□□ 0.87
Chmp6P0C0A3 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Chmp6P0C0A3 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Chmp6P0C0A3 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Chmp6P0C0A3 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Chmp6P0C0A3 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Chmp6P0C0A3 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Chmp6P0C0A3 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Chmp6P0C0A3 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC20.5■□□□□ 0.87
Chmp6P0C0A3 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Chmp6P0C0A3 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC20.5■□□□□ 0.87
Chmp6P0C0A3 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Chmp6P0C0A3 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Chmp6P0C0A3 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.5■□□□□ 0.87
Chmp6P0C0A3 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms