Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Nr1i3O35627 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Nr1i3O35627 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Nr1i3O35627 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Nr1i3O35627 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Nr1i3O35627 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Nr1i3O35627 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Nr1i3O35627 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Nr1i3O35627 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Nr1i3O35627 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Nr1i3O35627 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Nr1i3O35627 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Nr1i3O35627 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Nr1i3O35627 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Nr1i3O35627 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Nr1i3O35627 Gm8493-201ENSMUST00000196881 489 ntBASIC20.4■□□□□ 0.86
Nr1i3O35627 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.4■□□□□ 0.86
Nr1i3O35627 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Nr1i3O35627 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Nr1i3O35627 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Nr1i3O35627 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Nr1i3O35627 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Nr1i3O35627 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Nr1i3O35627 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Nr1i3O35627 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Nr1i3O35627 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.39■□□□□ 0.85
Nr1i3O35627 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Nr1i3O35627 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Nr1i3O35627 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC20.39■□□□□ 0.85
Nr1i3O35627 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Nr1i3O35627 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC20.39■□□□□ 0.85
Nr1i3O35627 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nr1i3O35627 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nr1i3O35627 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nr1i3O35627 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nr1i3O35627 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nr1i3O35627 Gm12821-201ENSMUST00000120022 600 ntBASIC20.38■□□□□ 0.85
Nr1i3O35627 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC20.38■□□□□ 0.85
Nr1i3O35627 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nr1i3O35627 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nr1i3O35627 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
Nr1i3O35627 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nr1i3O35627 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nr1i3O35627 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nr1i3O35627 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nr1i3O35627 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nr1i3O35627 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Nr1i3O35627 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Nr1i3O35627 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Nr1i3O35627 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC20.36■□□□□ 0.85
Nr1i3O35627 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC20.36■□□□□ 0.85
Nr1i3O35627 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Nr1i3O35627 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Nr1i3O35627 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.36■□□□□ 0.85
Nr1i3O35627 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Nr1i3O35627 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Nr1i3O35627 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC20.36■□□□□ 0.85
Nr1i3O35627 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Nr1i3O35627 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Nr1i3O35627 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nr1i3O35627 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nr1i3O35627 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Nr1i3O35627 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nr1i3O35627 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nr1i3O35627 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
Nr1i3O35627 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC20.35■□□□□ 0.85
Nr1i3O35627 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nr1i3O35627 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nr1i3O35627 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nr1i3O35627 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Nr1i3O35627 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nr1i3O35627 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nr1i3O35627 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1i3O35627 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1i3O35627 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1i3O35627 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1i3O35627 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1i3O35627 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1i3O35627 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1i3O35627 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1i3O35627 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1i3O35627 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1i3O35627 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1i3O35627 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Nr1i3O35627 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Nr1i3O35627 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Nr1i3O35627 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Nr1i3O35627 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Nr1i3O35627 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Nr1i3O35627 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Nr1i3O35627 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Nr1i3O35627 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Nr1i3O35627 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Nr1i3O35627 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Nr1i3O35627 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Nr1i3O35627 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Nr1i3O35627 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Nr1i3O35627 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Nr1i3O35627 Gm15853-202ENSMUST00000195518 2041 ntBASIC20.32■□□□□ 0.84
Nr1i3O35627 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms