Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm20049-201ENSMUST00000219950 730 ntBASIC22.91■■□□□ 1.26
Scn11aQ9R053 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
Scn11aQ9R053 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
Scn11aQ9R053 Gm37856-201ENSMUST00000191634 999 ntBASIC22.91■■□□□ 1.26
Scn11aQ9R053 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
Scn11aQ9R053 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC22.9■■□□□ 1.26
Scn11aQ9R053 Gm45640-201ENSMUST00000210665 1896 ntBASIC22.9■■□□□ 1.26
Scn11aQ9R053 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Scn11aQ9R053 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Scn11aQ9R053 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC22.9■■□□□ 1.26
Scn11aQ9R053 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC22.9■■□□□ 1.26
Scn11aQ9R053 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Scn11aQ9R053 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Scn11aQ9R053 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.26
Scn11aQ9R053 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Scn11aQ9R053 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
Scn11aQ9R053 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
Scn11aQ9R053 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Scn11aQ9R053 Gm6277-202ENSMUST00000224036 2779 ntBASIC22.89■■□□□ 1.25
Scn11aQ9R053 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Scn11aQ9R053 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Scn11aQ9R053 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC22.89■■□□□ 1.25
Scn11aQ9R053 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Scn11aQ9R053 Rab3c-203ENSMUST00000224180 967 ntBASIC22.89■■□□□ 1.25
Scn11aQ9R053 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
Scn11aQ9R053 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
Scn11aQ9R053 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Scn11aQ9R053 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Scn11aQ9R053 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Scn11aQ9R053 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Scn11aQ9R053 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Scn11aQ9R053 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
Scn11aQ9R053 Gm34220-201ENSMUST00000223001 2709 ntBASIC22.88■■□□□ 1.25
Scn11aQ9R053 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Scn11aQ9R053 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Scn11aQ9R053 Gm5540-201ENSMUST00000131852 1848 ntBASIC22.87■■□□□ 1.25
Scn11aQ9R053 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Scn11aQ9R053 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Scn11aQ9R053 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Scn11aQ9R053 Gm3807-201ENSMUST00000193520 1168 ntBASIC22.87■■□□□ 1.25
Scn11aQ9R053 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
Scn11aQ9R053 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
Scn11aQ9R053 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Scn11aQ9R053 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Scn11aQ9R053 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
Scn11aQ9R053 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Scn11aQ9R053 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Scn11aQ9R053 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC22.86■■□□□ 1.25
Scn11aQ9R053 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Scn11aQ9R053 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
Scn11aQ9R053 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
Scn11aQ9R053 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
Scn11aQ9R053 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
Scn11aQ9R053 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
Scn11aQ9R053 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Scn11aQ9R053 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Scn11aQ9R053 Gm13509-201ENSMUST00000119733 1308 ntBASIC22.85■■□□□ 1.25
Scn11aQ9R053 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
Scn11aQ9R053 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Scn11aQ9R053 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
Scn11aQ9R053 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Scn11aQ9R053 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Scn11aQ9R053 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Scn11aQ9R053 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
Scn11aQ9R053 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Scn11aQ9R053 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Scn11aQ9R053 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Scn11aQ9R053 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC22.84■■□□□ 1.25
Scn11aQ9R053 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC22.84■■□□□ 1.25
Scn11aQ9R053 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
Scn11aQ9R053 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
Scn11aQ9R053 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Scn11aQ9R053 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Scn11aQ9R053 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Scn11aQ9R053 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC22.83■■□□□ 1.25
Scn11aQ9R053 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC22.83■■□□□ 1.24
Scn11aQ9R053 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC22.83■■□□□ 1.24
Scn11aQ9R053 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC22.83■■□□□ 1.24
Scn11aQ9R053 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Scn11aQ9R053 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC22.82■■□□□ 1.24
Scn11aQ9R053 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Scn11aQ9R053 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
Scn11aQ9R053 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
Scn11aQ9R053 Gm19094-201ENSMUST00000209791 1246 ntBASIC22.82■■□□□ 1.24
Scn11aQ9R053 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Scn11aQ9R053 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.24
Scn11aQ9R053 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Scn11aQ9R053 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Scn11aQ9R053 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Scn11aQ9R053 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Scn11aQ9R053 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
Scn11aQ9R053 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC22.81■■□□□ 1.24
Scn11aQ9R053 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Scn11aQ9R053 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Scn11aQ9R053 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Scn11aQ9R053 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Scn11aQ9R053 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Scn11aQ9R053 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Scn11aQ9R053 Trmt13-210ENSMUST00000198454 880 ntBASIC22.81■■□□□ 1.24
Scn11aQ9R053 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms