Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim39Q9ESN2 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim39Q9ESN2 Grk6-206ENSMUST00000224995 2971 ntBASIC17.68■□□□□ 0.42
Trim39Q9ESN2 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim39Q9ESN2 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim39Q9ESN2 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim39Q9ESN2 Gm43137-201ENSMUST00000198052 594 ntBASIC17.68■□□□□ 0.42
Trim39Q9ESN2 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim39Q9ESN2 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Trim39Q9ESN2 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim39Q9ESN2 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Trim39Q9ESN2 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC17.68■□□□□ 0.42
Trim39Q9ESN2 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim39Q9ESN2 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC17.67■□□□□ 0.42
Trim39Q9ESN2 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Gm5576-201ENSMUST00000075809 1236 ntBASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Gm10209-201ENSMUST00000203397 1607 ntBASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.67■□□□□ 0.42
Trim39Q9ESN2 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Gm6802-201ENSMUST00000167843 1983 ntBASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Trim39Q9ESN2 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim39Q9ESN2 Gm42900-201ENSMUST00000197184 2167 ntBASIC17.64■□□□□ 0.42
Trim39Q9ESN2 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Trim39Q9ESN2 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim39Q9ESN2 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim39Q9ESN2 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim39Q9ESN2 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim39Q9ESN2 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim39Q9ESN2 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim39Q9ESN2 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim39Q9ESN2 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Trim39Q9ESN2 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim39Q9ESN2 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.64■□□□□ 0.41
Trim39Q9ESN2 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC17.64■□□□□ 0.41
Trim39Q9ESN2 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
Trim39Q9ESN2 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim39Q9ESN2 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim39Q9ESN2 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim39Q9ESN2 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim39Q9ESN2 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim39Q9ESN2 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim39Q9ESN2 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim39Q9ESN2 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim39Q9ESN2 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC17.63■□□□□ 0.41
Trim39Q9ESN2 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim39Q9ESN2 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim39Q9ESN2 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim39Q9ESN2 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim39Q9ESN2 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms