Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Smc1aQ9CU62 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Smc1aQ9CU62 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Smc1aQ9CU62 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Smc1aQ9CU62 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Smc1aQ9CU62 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Gm11421-201ENSMUST00000122124 294 ntBASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Smc1aQ9CU62 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Smc1aQ9CU62 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Smc1aQ9CU62 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Smc1aQ9CU62 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Smc1aQ9CU62 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC21.14■□□□□ 0.97
Smc1aQ9CU62 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Smc1aQ9CU62 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Smc1aQ9CU62 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Smc1aQ9CU62 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Smc1aQ9CU62 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Smc1aQ9CU62 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Smc1aQ9CU62 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Smc1aQ9CU62 Gm5784-201ENSMUST00000179344 2478 ntBASIC21.14■□□□□ 0.97
Smc1aQ9CU62 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Smc1aQ9CU62 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Smc1aQ9CU62 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC21.13■□□□□ 0.97
Smc1aQ9CU62 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Smc1aQ9CU62 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Smc1aQ9CU62 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Smc1aQ9CU62 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Smc1aQ9CU62 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Smc1aQ9CU62 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Smc1aQ9CU62 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Smc1aQ9CU62 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC21.13■□□□□ 0.97
Smc1aQ9CU62 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Smc1aQ9CU62 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Smc1aQ9CU62 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smc1aQ9CU62 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC21.12■□□□□ 0.97
Smc1aQ9CU62 Gm42778-201ENSMUST00000199644 553 ntBASIC21.12■□□□□ 0.97
Smc1aQ9CU62 AV356131-201ENSMUST00000206201 750 ntBASIC21.12■□□□□ 0.97
Smc1aQ9CU62 Gm10033-202ENSMUST00000211874 928 ntBASIC21.12■□□□□ 0.97
Smc1aQ9CU62 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smc1aQ9CU62 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Smc1aQ9CU62 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Smc1aQ9CU62 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smc1aQ9CU62 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smc1aQ9CU62 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smc1aQ9CU62 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smc1aQ9CU62 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Smc1aQ9CU62 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Smc1aQ9CU62 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Smc1aQ9CU62 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC21.11■□□□□ 0.97
Smc1aQ9CU62 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Smc1aQ9CU62 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC21.11■□□□□ 0.97
Smc1aQ9CU62 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Smc1aQ9CU62 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Smc1aQ9CU62 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Smc1aQ9CU62 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC21.11■□□□□ 0.97
Smc1aQ9CU62 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Smc1aQ9CU62 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Smc1aQ9CU62 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Smc1aQ9CU62 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Smc1aQ9CU62 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Smc1aQ9CU62 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Smc1aQ9CU62 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Smc1aQ9CU62 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Smc1aQ9CU62 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Smc1aQ9CU62 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC21.1■□□□□ 0.97
Smc1aQ9CU62 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC21.1■□□□□ 0.97
Smc1aQ9CU62 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Smc1aQ9CU62 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC21.1■□□□□ 0.97
Smc1aQ9CU62 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smc1aQ9CU62 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Smc1aQ9CU62 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smc1aQ9CU62 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smc1aQ9CU62 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smc1aQ9CU62 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smc1aQ9CU62 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smc1aQ9CU62 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Smc1aQ9CU62 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smc1aQ9CU62 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Smc1aQ9CU62 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC21.09■□□□□ 0.97
Smc1aQ9CU62 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smc1aQ9CU62 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.09■□□□□ 0.97
Smc1aQ9CU62 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smc1aQ9CU62 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smc1aQ9CU62 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms