Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ushbp1Q8R370 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Ushbp1Q8R370 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ushbp1Q8R370 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Ushbp1Q8R370 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC21.33■■□□□ 1.01
Ushbp1Q8R370 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ushbp1Q8R370 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ushbp1Q8R370 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC21.33■■□□□ 1.01
Ushbp1Q8R370 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ushbp1Q8R370 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
Ushbp1Q8R370 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Ushbp1Q8R370 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ushbp1Q8R370 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Ushbp1Q8R370 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Ushbp1Q8R370 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC21.32■■□□□ 1
Ushbp1Q8R370 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ushbp1Q8R370 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Ushbp1Q8R370 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ushbp1Q8R370 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC21.32■■□□□ 1
Ushbp1Q8R370 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ushbp1Q8R370 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Ushbp1Q8R370 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ushbp1Q8R370 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC21.31■■□□□ 1
Ushbp1Q8R370 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ushbp1Q8R370 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Ushbp1Q8R370 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ushbp1Q8R370 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Ushbp1Q8R370 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ushbp1Q8R370 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Ushbp1Q8R370 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC21.31■■□□□ 1
Ushbp1Q8R370 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ushbp1Q8R370 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ushbp1Q8R370 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC21.31■■□□□ 1
Ushbp1Q8R370 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ushbp1Q8R370 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ushbp1Q8R370 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ushbp1Q8R370 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC21.3■■□□□ 1
Ushbp1Q8R370 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ushbp1Q8R370 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Ushbp1Q8R370 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC21.3■■□□□ 1
Ushbp1Q8R370 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ushbp1Q8R370 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ushbp1Q8R370 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ushbp1Q8R370 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ushbp1Q8R370 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC21.3■■□□□ 1
Ushbp1Q8R370 Gm10602-201ENSMUST00000098239 609 ntBASIC21.3■■□□□ 1
Ushbp1Q8R370 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC21.3■■□□□ 1
Ushbp1Q8R370 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ushbp1Q8R370 Gm37352-201ENSMUST00000193908 2181 ntBASIC21.3■■□□□ 1
Ushbp1Q8R370 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Ushbp1Q8R370 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ushbp1Q8R370 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Ushbp1Q8R370 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ushbp1Q8R370 Gm11421-201ENSMUST00000122124 294 ntBASIC21.29■■□□□ 1
Ushbp1Q8R370 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC21.29■■□□□ 1
Ushbp1Q8R370 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Ushbp1Q8R370 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC21.29■■□□□ 1
Ushbp1Q8R370 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC21.29■■□□□ 1
Ushbp1Q8R370 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Ushbp1Q8R370 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ushbp1Q8R370 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC21.28■■□□□ 1
Ushbp1Q8R370 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ushbp1Q8R370 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC21.28■■□□□ 1
Ushbp1Q8R370 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
Ushbp1Q8R370 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC21.28■■□□□ 1
Ushbp1Q8R370 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ushbp1Q8R370 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Ushbp1Q8R370 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Ushbp1Q8R370 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ushbp1Q8R370 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.27■■□□□ 1
Ushbp1Q8R370 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Ushbp1Q8R370 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC21.27■■□□□ 1
Ushbp1Q8R370 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC21.27■■□□□ 1
Ushbp1Q8R370 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC21.27■■□□□ 1
Ushbp1Q8R370 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ushbp1Q8R370 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ushbp1Q8R370 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Ushbp1Q8R370 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Ushbp1Q8R370 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
Ushbp1Q8R370 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Gm12669-201ENSMUST00000122162 1009 ntBASIC21.26■□□□□ 0.99
Ushbp1Q8R370 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ushbp1Q8R370 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms