Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Syne4Q8CII8 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Syne4Q8CII8 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Syne4Q8CII8 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Syne4Q8CII8 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Syne4Q8CII8 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Syne4Q8CII8 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Syne4Q8CII8 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Syne4Q8CII8 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Syne4Q8CII8 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Syne4Q8CII8 Gm11249-201ENSMUST00000117071 859 ntBASIC21.69■■□□□ 1.06
Syne4Q8CII8 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Syne4Q8CII8 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC21.68■■□□□ 1.06
Syne4Q8CII8 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Syne4Q8CII8 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
Syne4Q8CII8 Gm18666-201ENSMUST00000190039 958 ntBASIC21.68■■□□□ 1.06
Syne4Q8CII8 Gm44549-201ENSMUST00000208351 577 ntBASIC21.68■■□□□ 1.06
Syne4Q8CII8 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Syne4Q8CII8 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC21.68■■□□□ 1.06
Syne4Q8CII8 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Syne4Q8CII8 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Syne4Q8CII8 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Syne4Q8CII8 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Syne4Q8CII8 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC21.67■■□□□ 1.06
Syne4Q8CII8 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Syne4Q8CII8 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC21.67■■□□□ 1.06
Syne4Q8CII8 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Syne4Q8CII8 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Syne4Q8CII8 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC21.67■■□□□ 1.06
Syne4Q8CII8 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC21.67■■□□□ 1.06
Syne4Q8CII8 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Syne4Q8CII8 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Syne4Q8CII8 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC21.67■■□□□ 1.06
Syne4Q8CII8 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Syne4Q8CII8 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Syne4Q8CII8 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC21.66■■□□□ 1.06
Syne4Q8CII8 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Syne4Q8CII8 Nrn1-203ENSMUST00000223611 1443 ntBASIC21.66■■□□□ 1.06
Syne4Q8CII8 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Syne4Q8CII8 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
Syne4Q8CII8 Gm21596-201ENSMUST00000178049 1316 ntBASIC21.66■■□□□ 1.06
Syne4Q8CII8 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Syne4Q8CII8 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Syne4Q8CII8 AC153881.1-201ENSMUST00000214448 284 ntBASIC21.66■■□□□ 1.06
Syne4Q8CII8 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Syne4Q8CII8 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Syne4Q8CII8 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Syne4Q8CII8 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Syne4Q8CII8 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Syne4Q8CII8 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Syne4Q8CII8 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Syne4Q8CII8 Snhg20-203ENSMUST00000182811 2153 ntBASIC21.65■■□□□ 1.06
Syne4Q8CII8 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Syne4Q8CII8 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
Syne4Q8CII8 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
Syne4Q8CII8 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC21.65■■□□□ 1.06
Syne4Q8CII8 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC21.65■■□□□ 1.06
Syne4Q8CII8 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Syne4Q8CII8 Gm10698-201ENSMUST00000182663 604 ntBASIC21.65■■□□□ 1.06
Syne4Q8CII8 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Syne4Q8CII8 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Syne4Q8CII8 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Syne4Q8CII8 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Syne4Q8CII8 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Syne4Q8CII8 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
Syne4Q8CII8 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Syne4Q8CII8 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Syne4Q8CII8 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Syne4Q8CII8 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC21.64■■□□□ 1.05
Syne4Q8CII8 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Syne4Q8CII8 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Syne4Q8CII8 Gm15565-201ENSMUST00000118890 427 ntBASIC21.64■■□□□ 1.05
Syne4Q8CII8 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Syne4Q8CII8 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC21.64■■□□□ 1.05
Syne4Q8CII8 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Syne4Q8CII8 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Syne4Q8CII8 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Syne4Q8CII8 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Syne4Q8CII8 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Syne4Q8CII8 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Syne4Q8CII8 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Syne4Q8CII8 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Syne4Q8CII8 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Syne4Q8CII8 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Syne4Q8CII8 Gm2399-201ENSMUST00000104944 225 ntBASIC21.62■■□□□ 1.05
Syne4Q8CII8 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Syne4Q8CII8 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Syne4Q8CII8 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
Syne4Q8CII8 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Syne4Q8CII8 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Syne4Q8CII8 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Syne4Q8CII8 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC21.61■■□□□ 1.05
Syne4Q8CII8 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Syne4Q8CII8 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC21.61■■□□□ 1.05
Syne4Q8CII8 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Syne4Q8CII8 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Syne4Q8CII8 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC21.61■■□□□ 1.05
Syne4Q8CII8 Dmtn-209ENSMUST00000228295 2572 ntBASIC21.61■■□□□ 1.05
Syne4Q8CII8 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Syne4Q8CII8 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms