Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc28bQ8CEG5 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc28bQ8CEG5 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc28bQ8CEG5 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc28bQ8CEG5 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC18.81■□□□□ 0.6
Ccdc28bQ8CEG5 Gm43702-201ENSMUST00000198772 2546 ntBASIC18.81■□□□□ 0.6
Ccdc28bQ8CEG5 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc28bQ8CEG5 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc28bQ8CEG5 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Ccdc28bQ8CEG5 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc28bQ8CEG5 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28bQ8CEG5 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28bQ8CEG5 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28bQ8CEG5 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28bQ8CEG5 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28bQ8CEG5 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Ccdc28bQ8CEG5 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28bQ8CEG5 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28bQ8CEG5 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.8■□□□□ 0.6
Ccdc28bQ8CEG5 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC18.8■□□□□ 0.6
Ccdc28bQ8CEG5 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28bQ8CEG5 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28bQ8CEG5 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC18.8■□□□□ 0.6
Ccdc28bQ8CEG5 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28bQ8CEG5 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
Ccdc28bQ8CEG5 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc28bQ8CEG5 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28bQ8CEG5 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC18.79■□□□□ 0.6
Ccdc28bQ8CEG5 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28bQ8CEG5 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28bQ8CEG5 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28bQ8CEG5 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28bQ8CEG5 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28bQ8CEG5 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28bQ8CEG5 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28bQ8CEG5 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28bQ8CEG5 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc28bQ8CEG5 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC18.79■□□□□ 0.6
Ccdc28bQ8CEG5 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc28bQ8CEG5 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc28bQ8CEG5 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC18.78■□□□□ 0.6
Ccdc28bQ8CEG5 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc28bQ8CEG5 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc28bQ8CEG5 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc28bQ8CEG5 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc28bQ8CEG5 Rncr4-201ENSMUST00000194541 2234 ntBASIC18.77■□□□□ 0.6
Ccdc28bQ8CEG5 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc28bQ8CEG5 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.77■□□□□ 0.6
Ccdc28bQ8CEG5 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC18.77■□□□□ 0.6
Ccdc28bQ8CEG5 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc28bQ8CEG5 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Ccdc28bQ8CEG5 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc28bQ8CEG5 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc28bQ8CEG5 Gm9885-202ENSMUST00000186234 2209 ntBASIC18.77■□□□□ 0.59
Ccdc28bQ8CEG5 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ccdc28bQ8CEG5 Gm42922-201ENSMUST00000195887 2078 ntBASIC18.77■□□□□ 0.59
Ccdc28bQ8CEG5 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Gm27045-201ENSMUST00000182145 1402 ntBASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Gm18755-201ENSMUST00000218030 1099 ntBASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Dmtn-207ENSMUST00000228001 2437 ntBASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Gm6085-201ENSMUST00000182774 1470 ntBASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Ccdc28bQ8CEG5 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc28bQ8CEG5 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.75■□□□□ 0.59
Ccdc28bQ8CEG5 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc28bQ8CEG5 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Ccdc28bQ8CEG5 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Ccdc28bQ8CEG5 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC18.75■□□□□ 0.59
Ccdc28bQ8CEG5 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.75■□□□□ 0.59
Ccdc28bQ8CEG5 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Ccdc28bQ8CEG5 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc28bQ8CEG5 Fst-202ENSMUST00000223640 2612 ntBASIC18.75■□□□□ 0.59
Ccdc28bQ8CEG5 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc28bQ8CEG5 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc28bQ8CEG5 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Ccdc28bQ8CEG5 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Ccdc28bQ8CEG5 Dmtn-210ENSMUST00000228824 2377 ntBASIC18.74■□□□□ 0.59
Ccdc28bQ8CEG5 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc28bQ8CEG5 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC18.74■□□□□ 0.59
Ccdc28bQ8CEG5 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc28bQ8CEG5 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc28bQ8CEG5 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc28bQ8CEG5 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc28bQ8CEG5 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC18.74■□□□□ 0.59
Ccdc28bQ8CEG5 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 174.6 ms