Protein–RNA interactions for Protein: Q8BRE0

Rd3, Protein RD3, mousemouse

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rd3Q8BRE0 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Rd3Q8BRE0 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rd3Q8BRE0 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rd3Q8BRE0 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rd3Q8BRE0 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rd3Q8BRE0 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.21■□□□□ 0.83
Rd3Q8BRE0 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Rd3Q8BRE0 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC20.21■□□□□ 0.83
Rd3Q8BRE0 Gm8520-201ENSMUST00000186517 868 ntBASIC20.21■□□□□ 0.83
Rd3Q8BRE0 Gm44672-201ENSMUST00000206944 1098 ntBASIC20.21■□□□□ 0.83
Rd3Q8BRE0 Gm20049-201ENSMUST00000219950 730 ntBASIC20.21■□□□□ 0.83
Rd3Q8BRE0 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rd3Q8BRE0 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rd3Q8BRE0 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rd3Q8BRE0 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Rd3Q8BRE0 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rd3Q8BRE0 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Rd3Q8BRE0 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rd3Q8BRE0 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Rd3Q8BRE0 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC20.2■□□□□ 0.82
Rd3Q8BRE0 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC20.2■□□□□ 0.82
Rd3Q8BRE0 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Rd3Q8BRE0 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC20.19■□□□□ 0.82
Rd3Q8BRE0 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rd3Q8BRE0 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rd3Q8BRE0 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC20.18■□□□□ 0.82
Rd3Q8BRE0 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rd3Q8BRE0 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rd3Q8BRE0 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.18■□□□□ 0.82
Rd3Q8BRE0 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rd3Q8BRE0 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Rd3Q8BRE0 Gm13168-201ENSMUST00000121771 632 ntBASIC20.18■□□□□ 0.82
Rd3Q8BRE0 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC20.18■□□□□ 0.82
Rd3Q8BRE0 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rd3Q8BRE0 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rd3Q8BRE0 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC20.18■□□□□ 0.82
Rd3Q8BRE0 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rd3Q8BRE0 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rd3Q8BRE0 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Rd3Q8BRE0 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rd3Q8BRE0 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rd3Q8BRE0 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC20.17■□□□□ 0.82
Rd3Q8BRE0 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rd3Q8BRE0 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Rd3Q8BRE0 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC20.17■□□□□ 0.82
Rd3Q8BRE0 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
Rd3Q8BRE0 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
Rd3Q8BRE0 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rd3Q8BRE0 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rd3Q8BRE0 AC135637.1-201ENSMUST00000227750 365 ntBASIC20.17■□□□□ 0.82
Rd3Q8BRE0 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rd3Q8BRE0 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rd3Q8BRE0 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rd3Q8BRE0 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Rd3Q8BRE0 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rd3Q8BRE0 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
Rd3Q8BRE0 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rd3Q8BRE0 AC122769.4-201ENSMUST00000228166 901 ntBASIC20.16■□□□□ 0.82
Rd3Q8BRE0 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rd3Q8BRE0 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rd3Q8BRE0 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rd3Q8BRE0 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Rd3Q8BRE0 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rd3Q8BRE0 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Rd3Q8BRE0 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rd3Q8BRE0 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Rd3Q8BRE0 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Rd3Q8BRE0 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rd3Q8BRE0 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rd3Q8BRE0 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC20.15■□□□□ 0.82
Rd3Q8BRE0 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
Rd3Q8BRE0 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rd3Q8BRE0 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rd3Q8BRE0 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC20.15■□□□□ 0.82
Rd3Q8BRE0 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC20.15■□□□□ 0.82
Rd3Q8BRE0 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Rd3Q8BRE0 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.15■□□□□ 0.82
Rd3Q8BRE0 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Rd3Q8BRE0 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rd3Q8BRE0 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Rd3Q8BRE0 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rd3Q8BRE0 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rd3Q8BRE0 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Rd3Q8BRE0 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms