Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Clrn3Q8BHH8 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Grk6-206ENSMUST00000224995 2971 ntBASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Clrn3Q8BHH8 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clrn3Q8BHH8 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Clrn3Q8BHH8 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clrn3Q8BHH8 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Clrn3Q8BHH8 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clrn3Q8BHH8 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clrn3Q8BHH8 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Clrn3Q8BHH8 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Clrn3Q8BHH8 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clrn3Q8BHH8 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Clrn3Q8BHH8 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clrn3Q8BHH8 Gm5540-201ENSMUST00000131852 1848 ntBASIC17.77■□□□□ 0.44
Clrn3Q8BHH8 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clrn3Q8BHH8 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.44
Clrn3Q8BHH8 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clrn3Q8BHH8 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clrn3Q8BHH8 Gm21168-201ENSMUST00000199646 1096 ntBASIC17.77■□□□□ 0.44
Clrn3Q8BHH8 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Clrn3Q8BHH8 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Clrn3Q8BHH8 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Clrn3Q8BHH8 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Gm27801-201ENSMUST00000184174 223 ntBASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Cdc34b-202ENSMUST00000188741 1252 ntBASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC17.76■□□□□ 0.43
Clrn3Q8BHH8 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Clrn3Q8BHH8 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clrn3Q8BHH8 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clrn3Q8BHH8 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clrn3Q8BHH8 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Clrn3Q8BHH8 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
Clrn3Q8BHH8 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clrn3Q8BHH8 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clrn3Q8BHH8 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC17.75■□□□□ 0.43
Clrn3Q8BHH8 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clrn3Q8BHH8 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Clrn3Q8BHH8 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 Gm43060-201ENSMUST00000200621 289 ntBASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Clrn3Q8BHH8 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC17.73■□□□□ 0.43
Clrn3Q8BHH8 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Clrn3Q8BHH8 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clrn3Q8BHH8 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clrn3Q8BHH8 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Clrn3Q8BHH8 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC17.73■□□□□ 0.43
Clrn3Q8BHH8 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Clrn3Q8BHH8 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC17.73■□□□□ 0.43
Clrn3Q8BHH8 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms