Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddx55Q6ZPL9 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddx55Q6ZPL9 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
Ddx55Q6ZPL9 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
Ddx55Q6ZPL9 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddx55Q6ZPL9 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Ddx55Q6ZPL9 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 Gm21596-201ENSMUST00000178049 1316 ntBASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 Gm32699-201ENSMUST00000221728 1988 ntBASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Ddx55Q6ZPL9 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Ddx55Q6ZPL9 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ddx55Q6ZPL9 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC21.84■■□□□ 1.09
Ddx55Q6ZPL9 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ddx55Q6ZPL9 Krtap5-1-202ENSMUST00000188274 742 ntBASIC21.84■■□□□ 1.09
Ddx55Q6ZPL9 Gm18666-201ENSMUST00000190039 958 ntBASIC21.84■■□□□ 1.09
Ddx55Q6ZPL9 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC21.84■■□□□ 1.09
Ddx55Q6ZPL9 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ddx55Q6ZPL9 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Ddx55Q6ZPL9 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC21.83■■□□□ 1.09
Ddx55Q6ZPL9 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Ddx55Q6ZPL9 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Ddx55Q6ZPL9 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Ddx55Q6ZPL9 AC153881.1-201ENSMUST00000214448 284 ntBASIC21.83■■□□□ 1.09
Ddx55Q6ZPL9 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Ddx55Q6ZPL9 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Ddx55Q6ZPL9 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Ddx55Q6ZPL9 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
Ddx55Q6ZPL9 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC21.82■■□□□ 1.08
Ddx55Q6ZPL9 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
Ddx55Q6ZPL9 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Ddx55Q6ZPL9 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
Ddx55Q6ZPL9 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC21.82■■□□□ 1.08
Ddx55Q6ZPL9 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Ddx55Q6ZPL9 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC21.82■■□□□ 1.08
Ddx55Q6ZPL9 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Ddx55Q6ZPL9 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
Ddx55Q6ZPL9 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Ddx55Q6ZPL9 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Ddx55Q6ZPL9 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ddx55Q6ZPL9 Nrn1-203ENSMUST00000223611 1443 ntBASIC21.81■■□□□ 1.08
Ddx55Q6ZPL9 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ddx55Q6ZPL9 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ddx55Q6ZPL9 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Ddx55Q6ZPL9 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC21.81■■□□□ 1.08
Ddx55Q6ZPL9 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Ddx55Q6ZPL9 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC21.81■■□□□ 1.08
Ddx55Q6ZPL9 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ddx55Q6ZPL9 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Ddx55Q6ZPL9 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ddx55Q6ZPL9 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Ddx55Q6ZPL9 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC21.8■■□□□ 1.08
Ddx55Q6ZPL9 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ddx55Q6ZPL9 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC21.8■■□□□ 1.08
Ddx55Q6ZPL9 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
Ddx55Q6ZPL9 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddx55Q6ZPL9 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddx55Q6ZPL9 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Ddx55Q6ZPL9 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddx55Q6ZPL9 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddx55Q6ZPL9 Gm2399-201ENSMUST00000104944 225 ntBASIC21.79■■□□□ 1.08
Ddx55Q6ZPL9 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC21.79■■□□□ 1.08
Ddx55Q6ZPL9 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddx55Q6ZPL9 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Ddx55Q6ZPL9 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Ddx55Q6ZPL9 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ddx55Q6ZPL9 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddx55Q6ZPL9 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddx55Q6ZPL9 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddx55Q6ZPL9 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.78■■□□□ 1.08
Ddx55Q6ZPL9 Gm43672-201ENSMUST00000199072 1731 ntBASIC21.78■■□□□ 1.08
Ddx55Q6ZPL9 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddx55Q6ZPL9 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Ddx55Q6ZPL9 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC21.78■■□□□ 1.08
Ddx55Q6ZPL9 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddx55Q6ZPL9 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ddx55Q6ZPL9 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Ddx55Q6ZPL9 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC21.77■■□□□ 1.08
Ddx55Q6ZPL9 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx55Q6ZPL9 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx55Q6ZPL9 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx55Q6ZPL9 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx55Q6ZPL9 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC21.77■■□□□ 1.08
Ddx55Q6ZPL9 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ddx55Q6ZPL9 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Ddx55Q6ZPL9 AC130671.1-201ENSMUST00000227384 1237 ntBASIC21.77■■□□□ 1.08
Ddx55Q6ZPL9 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC21.77■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms