Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Shkbp1Q6P7W2 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Shkbp1Q6P7W2 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Shkbp1Q6P7W2 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Shkbp1Q6P7W2 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Shkbp1Q6P7W2 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Shkbp1Q6P7W2 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Shkbp1Q6P7W2 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Shkbp1Q6P7W2 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Shkbp1Q6P7W2 Trmt13-210ENSMUST00000198454 880 ntBASIC19.91■□□□□ 0.78
Shkbp1Q6P7W2 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Shkbp1Q6P7W2 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Shkbp1Q6P7W2 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Shkbp1Q6P7W2 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Shkbp1Q6P7W2 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Shkbp1Q6P7W2 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Shkbp1Q6P7W2 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Shkbp1Q6P7W2 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Shkbp1Q6P7W2 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC19.9■□□□□ 0.78
Shkbp1Q6P7W2 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Shkbp1Q6P7W2 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Shkbp1Q6P7W2 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Shkbp1Q6P7W2 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Shkbp1Q6P7W2 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Shkbp1Q6P7W2 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Shkbp1Q6P7W2 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Shkbp1Q6P7W2 Gm44878-201ENSMUST00000205812 1295 ntBASIC19.9■□□□□ 0.78
Shkbp1Q6P7W2 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Shkbp1Q6P7W2 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Shkbp1Q6P7W2 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.9■□□□□ 0.78
Shkbp1Q6P7W2 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Shkbp1Q6P7W2 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Shkbp1Q6P7W2 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Shkbp1Q6P7W2 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
Shkbp1Q6P7W2 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Shkbp1Q6P7W2 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Gm6277-202ENSMUST00000224036 2779 ntBASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
Shkbp1Q6P7W2 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Shkbp1Q6P7W2 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC19.88■□□□□ 0.77
Shkbp1Q6P7W2 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC19.88■□□□□ 0.77
Shkbp1Q6P7W2 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Shkbp1Q6P7W2 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Shkbp1Q6P7W2 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Shkbp1Q6P7W2 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Shkbp1Q6P7W2 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Shkbp1Q6P7W2 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Shkbp1Q6P7W2 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Shkbp1Q6P7W2 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Shkbp1Q6P7W2 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Shkbp1Q6P7W2 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Shkbp1Q6P7W2 Gm38160-201ENSMUST00000193090 2499 ntBASIC19.87■□□□□ 0.77
Shkbp1Q6P7W2 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Shkbp1Q6P7W2 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Shkbp1Q6P7W2 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Shkbp1Q6P7W2 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Shkbp1Q6P7W2 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Shkbp1Q6P7W2 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Shkbp1Q6P7W2 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Shkbp1Q6P7W2 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Shkbp1Q6P7W2 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
Shkbp1Q6P7W2 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC19.86■□□□□ 0.77
Shkbp1Q6P7W2 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC19.86■□□□□ 0.77
Shkbp1Q6P7W2 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC19.86■□□□□ 0.77
Shkbp1Q6P7W2 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Shkbp1Q6P7W2 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Shkbp1Q6P7W2 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms