Protein–RNA interactions for Protein: Q60847

Col12a1, Collagen alpha-1(XII) chain, mousemouse

Predictions only

Length 3,120 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col12a1Q60847 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col12a1Q60847 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC19.14■□□□□ 0.65
Col12a1Q60847 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC19.14■□□□□ 0.65
Col12a1Q60847 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col12a1Q60847 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col12a1Q60847 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Col12a1Q60847 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col12a1Q60847 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col12a1Q60847 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Col12a1Q60847 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col12a1Q60847 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col12a1Q60847 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col12a1Q60847 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Col12a1Q60847 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Col12a1Q60847 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col12a1Q60847 Gm13559-201ENSMUST00000120476 863 ntBASIC19.12■□□□□ 0.65
Col12a1Q60847 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Col12a1Q60847 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col12a1Q60847 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col12a1Q60847 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
Col12a1Q60847 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Col12a1Q60847 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col12a1Q60847 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col12a1Q60847 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col12a1Q60847 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col12a1Q60847 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC19.11■□□□□ 0.65
Col12a1Q60847 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Col12a1Q60847 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col12a1Q60847 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col12a1Q60847 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col12a1Q60847 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col12a1Q60847 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Col12a1Q60847 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Col12a1Q60847 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC19.1■□□□□ 0.65
Col12a1Q60847 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col12a1Q60847 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC19.1■□□□□ 0.65
Col12a1Q60847 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Col12a1Q60847 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Col12a1Q60847 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col12a1Q60847 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.09■□□□□ 0.65
Col12a1Q60847 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col12a1Q60847 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col12a1Q60847 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col12a1Q60847 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col12a1Q60847 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Col12a1Q60847 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC19.09■□□□□ 0.65
Col12a1Q60847 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col12a1Q60847 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col12a1Q60847 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC19.09■□□□□ 0.65
Col12a1Q60847 Gm18101-201ENSMUST00000215769 548 ntBASIC19.09■□□□□ 0.65
Col12a1Q60847 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Col12a1Q60847 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col12a1Q60847 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC19.08■□□□□ 0.65
Col12a1Q60847 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Col12a1Q60847 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Col12a1Q60847 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Col12a1Q60847 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Col12a1Q60847 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Col12a1Q60847 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Col12a1Q60847 AC175538.1-201ENSMUST00000225343 1269 ntBASIC19.08■□□□□ 0.64
Col12a1Q60847 AC163280.1-201ENSMUST00000228194 1100 ntBASIC19.08■□□□□ 0.64
Col12a1Q60847 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
Col12a1Q60847 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Col12a1Q60847 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Col12a1Q60847 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC19.07■□□□□ 0.64
Col12a1Q60847 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC19.07■□□□□ 0.64
Col12a1Q60847 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col12a1Q60847 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col12a1Q60847 Snhg20-203ENSMUST00000182811 2153 ntBASIC19.07■□□□□ 0.64
Col12a1Q60847 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col12a1Q60847 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Col12a1Q60847 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC19.06■□□□□ 0.64
Col12a1Q60847 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col12a1Q60847 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC19.06■□□□□ 0.64
Col12a1Q60847 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col12a1Q60847 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col12a1Q60847 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col12a1Q60847 Ank2-226ENSMUST00000189368 339 ntBASIC19.06■□□□□ 0.64
Col12a1Q60847 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col12a1Q60847 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col12a1Q60847 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col12a1Q60847 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col12a1Q60847 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC19.05■□□□□ 0.64
Col12a1Q60847 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Col12a1Q60847 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col12a1Q60847 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col12a1Q60847 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col12a1Q60847 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC19.05■□□□□ 0.64
Col12a1Q60847 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Col12a1Q60847 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col12a1Q60847 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC19.05■□□□□ 0.64
Col12a1Q60847 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col12a1Q60847 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col12a1Q60847 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col12a1Q60847 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
Col12a1Q60847 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col12a1Q60847 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col12a1Q60847 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC19.04■□□□□ 0.64
Col12a1Q60847 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col12a1Q60847 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms