Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Upf3aQ3ULJ3 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Upf3aQ3ULJ3 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Upf3aQ3ULJ3 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Upf3aQ3ULJ3 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Upf3aQ3ULJ3 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Upf3aQ3ULJ3 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Upf3aQ3ULJ3 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Upf3aQ3ULJ3 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC20.12■□□□□ 0.81
Upf3aQ3ULJ3 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Upf3aQ3ULJ3 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Upf3aQ3ULJ3 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Upf3aQ3ULJ3 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Upf3aQ3ULJ3 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.11■□□□□ 0.81
Upf3aQ3ULJ3 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.11■□□□□ 0.81
Upf3aQ3ULJ3 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Upf3aQ3ULJ3 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.11■□□□□ 0.81
Upf3aQ3ULJ3 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Upf3aQ3ULJ3 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Upf3aQ3ULJ3 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Upf3aQ3ULJ3 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC20.11■□□□□ 0.81
Upf3aQ3ULJ3 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC20.11■□□□□ 0.81
Upf3aQ3ULJ3 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC20.11■□□□□ 0.81
Upf3aQ3ULJ3 Gm27275-201ENSMUST00000184318 272 ntBASIC20.11■□□□□ 0.81
Upf3aQ3ULJ3 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Upf3aQ3ULJ3 Gm20100-201ENSMUST00000209418 2272 ntBASIC20.11■□□□□ 0.81
Upf3aQ3ULJ3 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Upf3aQ3ULJ3 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Upf3aQ3ULJ3 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Upf3aQ3ULJ3 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3aQ3ULJ3 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Upf3aQ3ULJ3 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3aQ3ULJ3 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3aQ3ULJ3 Gm26971-201ENSMUST00000182423 1072 ntBASIC20.1■□□□□ 0.81
Upf3aQ3ULJ3 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3aQ3ULJ3 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3aQ3ULJ3 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3aQ3ULJ3 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3aQ3ULJ3 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3aQ3ULJ3 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Upf3aQ3ULJ3 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3aQ3ULJ3 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3aQ3ULJ3 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3aQ3ULJ3 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC20.09■□□□□ 0.81
Upf3aQ3ULJ3 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3aQ3ULJ3 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3aQ3ULJ3 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Upf3aQ3ULJ3 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3aQ3ULJ3 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3aQ3ULJ3 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3aQ3ULJ3 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Upf3aQ3ULJ3 Gm32699-201ENSMUST00000221728 1988 ntBASIC20.08■□□□□ 0.81
Upf3aQ3ULJ3 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC20.08■□□□□ 0.81
Upf3aQ3ULJ3 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Upf3aQ3ULJ3 Gm12896-201ENSMUST00000118430 226 ntBASIC20.08■□□□□ 0.81
Upf3aQ3ULJ3 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Upf3aQ3ULJ3 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.08■□□□□ 0.81
Upf3aQ3ULJ3 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC20.08■□□□□ 0.81
Upf3aQ3ULJ3 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.08■□□□□ 0.81
Upf3aQ3ULJ3 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Upf3aQ3ULJ3 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20.08■□□□□ 0.8
Upf3aQ3ULJ3 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Upf3aQ3ULJ3 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Upf3aQ3ULJ3 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Upf3aQ3ULJ3 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Upf3aQ3ULJ3 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC20.07■□□□□ 0.8
Upf3aQ3ULJ3 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Upf3aQ3ULJ3 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC20.07■□□□□ 0.8
Upf3aQ3ULJ3 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Upf3aQ3ULJ3 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Upf3aQ3ULJ3 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Upf3aQ3ULJ3 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Upf3aQ3ULJ3 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3aQ3ULJ3 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3aQ3ULJ3 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Upf3aQ3ULJ3 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3aQ3ULJ3 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Upf3aQ3ULJ3 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3aQ3ULJ3 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3aQ3ULJ3 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3aQ3ULJ3 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3aQ3ULJ3 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Upf3aQ3ULJ3 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Upf3aQ3ULJ3 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Gm13181-201ENSMUST00000120117 1069 ntBASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf3aQ3ULJ3 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms