Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm32699-201ENSMUST00000221728 1988 ntBASIC22.39■■□□□ 1.18
Limch1Q3UH68 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC22.39■■□□□ 1.18
Limch1Q3UH68 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Limch1Q3UH68 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
Limch1Q3UH68 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Limch1Q3UH68 Gm10033-202ENSMUST00000211874 928 ntBASIC22.39■■□□□ 1.17
Limch1Q3UH68 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
Limch1Q3UH68 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Limch1Q3UH68 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
Limch1Q3UH68 Gm10571-201ENSMUST00000097869 1638 ntBASIC22.39■■□□□ 1.17
Limch1Q3UH68 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
Limch1Q3UH68 AC124603.1-201ENSMUST00000223843 308 ntBASIC22.38■■□□□ 1.17
Limch1Q3UH68 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Limch1Q3UH68 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Limch1Q3UH68 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Limch1Q3UH68 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
Limch1Q3UH68 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Limch1Q3UH68 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC22.38■■□□□ 1.17
Limch1Q3UH68 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Limch1Q3UH68 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
Limch1Q3UH68 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
Limch1Q3UH68 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
Limch1Q3UH68 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Limch1Q3UH68 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Limch1Q3UH68 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Limch1Q3UH68 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Limch1Q3UH68 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Limch1Q3UH68 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Limch1Q3UH68 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
Limch1Q3UH68 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Limch1Q3UH68 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Limch1Q3UH68 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Limch1Q3UH68 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Limch1Q3UH68 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
Limch1Q3UH68 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Limch1Q3UH68 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Limch1Q3UH68 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Limch1Q3UH68 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC22.35■■□□□ 1.17
Limch1Q3UH68 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC22.35■■□□□ 1.17
Limch1Q3UH68 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Limch1Q3UH68 Gm37352-201ENSMUST00000193908 2181 ntBASIC22.35■■□□□ 1.17
Limch1Q3UH68 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Limch1Q3UH68 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Limch1Q3UH68 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Limch1Q3UH68 Gm11421-201ENSMUST00000122124 294 ntBASIC22.35■■□□□ 1.17
Limch1Q3UH68 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Limch1Q3UH68 AV356131-201ENSMUST00000206201 750 ntBASIC22.35■■□□□ 1.17
Limch1Q3UH68 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Limch1Q3UH68 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Limch1Q3UH68 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Limch1Q3UH68 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Limch1Q3UH68 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC22.34■■□□□ 1.17
Limch1Q3UH68 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC22.34■■□□□ 1.17
Limch1Q3UH68 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC22.34■■□□□ 1.17
Limch1Q3UH68 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Limch1Q3UH68 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Limch1Q3UH68 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Limch1Q3UH68 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
Limch1Q3UH68 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Limch1Q3UH68 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
Limch1Q3UH68 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC22.33■■□□□ 1.17
Limch1Q3UH68 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
Limch1Q3UH68 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Limch1Q3UH68 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Limch1Q3UH68 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC22.33■■□□□ 1.17
Limch1Q3UH68 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Limch1Q3UH68 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC22.33■■□□□ 1.16
Limch1Q3UH68 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Limch1Q3UH68 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Limch1Q3UH68 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Limch1Q3UH68 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Limch1Q3UH68 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC22.31■■□□□ 1.16
Limch1Q3UH68 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Limch1Q3UH68 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Limch1Q3UH68 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
Limch1Q3UH68 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
Limch1Q3UH68 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Limch1Q3UH68 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC22.31■■□□□ 1.16
Limch1Q3UH68 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Limch1Q3UH68 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
Limch1Q3UH68 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Limch1Q3UH68 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Limch1Q3UH68 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
Limch1Q3UH68 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Limch1Q3UH68 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Limch1Q3UH68 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Limch1Q3UH68 AC126028.2-201ENSMUST00000228100 1833 ntBASIC22.3■■□□□ 1.16
Limch1Q3UH68 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC22.3■■□□□ 1.16
Limch1Q3UH68 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Limch1Q3UH68 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Limch1Q3UH68 Gm42778-201ENSMUST00000199644 553 ntBASIC22.3■■□□□ 1.16
Limch1Q3UH68 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Limch1Q3UH68 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC22.3■■□□□ 1.16
Limch1Q3UH68 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Limch1Q3UH68 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
Limch1Q3UH68 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Limch1Q3UH68 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
Limch1Q3UH68 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
Limch1Q3UH68 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Limch1Q3UH68 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms