Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col9a1Q05722 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col9a1Q05722 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC18.82■□□□□ 0.6
Col9a1Q05722 AC159205.6-201ENSMUST00000224935 887 ntBASIC18.82■□□□□ 0.6
Col9a1Q05722 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col9a1Q05722 AC131586.2-201ENSMUST00000228370 1512 ntBASIC18.82■□□□□ 0.6
Col9a1Q05722 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col9a1Q05722 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col9a1Q05722 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col9a1Q05722 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col9a1Q05722 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC18.81■□□□□ 0.6
Col9a1Q05722 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Col9a1Q05722 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col9a1Q05722 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col9a1Q05722 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Col9a1Q05722 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Col9a1Q05722 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Col9a1Q05722 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col9a1Q05722 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Col9a1Q05722 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col9a1Q05722 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col9a1Q05722 AW822252-206ENSMUST00000208904 237 ntBASIC18.8■□□□□ 0.6
Col9a1Q05722 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Col9a1Q05722 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col9a1Q05722 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col9a1Q05722 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col9a1Q05722 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Col9a1Q05722 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col9a1Q05722 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
Col9a1Q05722 Gm12382-201ENSMUST00000122005 922 ntBASIC18.79■□□□□ 0.6
Col9a1Q05722 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC18.79■□□□□ 0.6
Col9a1Q05722 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col9a1Q05722 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC18.79■□□□□ 0.6
Col9a1Q05722 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Col9a1Q05722 AC154471.1-201ENSMUST00000224418 436 ntBASIC18.79■□□□□ 0.6
Col9a1Q05722 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col9a1Q05722 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col9a1Q05722 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col9a1Q05722 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col9a1Q05722 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC18.79■□□□□ 0.6
Col9a1Q05722 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Col9a1Q05722 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col9a1Q05722 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.78■□□□□ 0.6
Col9a1Q05722 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC18.78■□□□□ 0.6
Col9a1Q05722 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC18.78■□□□□ 0.6
Col9a1Q05722 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col9a1Q05722 Gm18959-201ENSMUST00000208954 655 ntBASIC18.78■□□□□ 0.6
Col9a1Q05722 Gm18032-201ENSMUST00000222541 538 ntBASIC18.78■□□□□ 0.6
Col9a1Q05722 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col9a1Q05722 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col9a1Q05722 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col9a1Q05722 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col9a1Q05722 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
Col9a1Q05722 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col9a1Q05722 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col9a1Q05722 Gm37415-201ENSMUST00000192265 2054 ntBASIC18.77■□□□□ 0.6
Col9a1Q05722 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Col9a1Q05722 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Col9a1Q05722 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col9a1Q05722 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC18.77■□□□□ 0.6
Col9a1Q05722 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col9a1Q05722 Gm17661-201ENSMUST00000170317 270 ntBASIC18.77■□□□□ 0.6
Col9a1Q05722 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC18.77■□□□□ 0.6
Col9a1Q05722 Gm44549-201ENSMUST00000208351 577 ntBASIC18.77■□□□□ 0.6
Col9a1Q05722 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC18.77■□□□□ 0.6
Col9a1Q05722 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
Col9a1Q05722 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC18.77■□□□□ 0.6
Col9a1Q05722 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col9a1Q05722 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col9a1Q05722 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col9a1Q05722 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col9a1Q05722 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC18.76■□□□□ 0.59
Col9a1Q05722 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col9a1Q05722 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC18.76■□□□□ 0.59
Col9a1Q05722 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col9a1Q05722 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col9a1Q05722 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col9a1Q05722 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col9a1Q05722 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col9a1Q05722 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
Col9a1Q05722 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col9a1Q05722 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col9a1Q05722 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col9a1Q05722 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col9a1Q05722 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col9a1Q05722 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Col9a1Q05722 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col9a1Q05722 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col9a1Q05722 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
Col9a1Q05722 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
Col9a1Q05722 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col9a1Q05722 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Col9a1Q05722 Gm27032-201ENSMUST00000183124 1116 ntBASIC18.74■□□□□ 0.59
Col9a1Q05722 Gm5186-201ENSMUST00000218781 920 ntBASIC18.74■□□□□ 0.59
Col9a1Q05722 AC154621.1-201ENSMUST00000226155 1119 ntBASIC18.74■□□□□ 0.59
Col9a1Q05722 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col9a1Q05722 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col9a1Q05722 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col9a1Q05722 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col9a1Q05722 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 125.9 ms