Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Hmgb1P63158 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC20.9■□□□□ 0.94
Hmgb1P63158 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Hmgb1P63158 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Hmgb1P63158 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC20.9■□□□□ 0.94
Hmgb1P63158 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Hmgb1P63158 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Hmgb1P63158 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Hmgb1P63158 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Hmgb1P63158 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Hmgb1P63158 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Hmgb1P63158 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC20.89■□□□□ 0.93
Hmgb1P63158 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Hmgb1P63158 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC20.89■□□□□ 0.93
Hmgb1P63158 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Hmgb1P63158 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.89■□□□□ 0.93
Hmgb1P63158 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Hmgb1P63158 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Hmgb1P63158 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Hmgb1P63158 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Hmgb1P63158 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Hmgb1P63158 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Hmgb1P63158 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
Hmgb1P63158 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb1P63158 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb1P63158 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb1P63158 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb1P63158 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.88■□□□□ 0.93
Hmgb1P63158 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
Hmgb1P63158 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb1P63158 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb1P63158 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb1P63158 AC137127.1-201ENSMUST00000213466 1078 ntBASIC20.88■□□□□ 0.93
Hmgb1P63158 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Hmgb1P63158 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb1P63158 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb1P63158 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb1P63158 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb1P63158 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb1P63158 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Hmgb1P63158 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb1P63158 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb1P63158 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Hmgb1P63158 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb1P63158 Mir7075-201ENSMUST00000184187 82 ntBASIC20.87■□□□□ 0.93
Hmgb1P63158 Wdr70-203ENSMUST00000227371 1130 ntBASIC20.87■□□□□ 0.93
Hmgb1P63158 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb1P63158 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb1P63158 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb1P63158 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb1P63158 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb1P63158 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb1P63158 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.87■□□□□ 0.93
Hmgb1P63158 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb1P63158 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb1P63158 Gm5540-201ENSMUST00000131852 1848 ntBASIC20.86■□□□□ 0.93
Hmgb1P63158 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb1P63158 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb1P63158 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Hmgb1P63158 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb1P63158 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
Hmgb1P63158 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb1P63158 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.86■□□□□ 0.93
Hmgb1P63158 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC20.86■□□□□ 0.93
Hmgb1P63158 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb1P63158 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb1P63158 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb1P63158 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Hmgb1P63158 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb1P63158 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb1P63158 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb1P63158 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Hmgb1P63158 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb1P63158 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb1P63158 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb1P63158 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb1P63158 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb1P63158 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb1P63158 Smad6-203ENSMUST00000179458 273 ntBASIC20.85■□□□□ 0.93
Hmgb1P63158 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb1P63158 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Hmgb1P63158 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
Hmgb1P63158 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb1P63158 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb1P63158 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb1P63158 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb1P63158 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb1P63158 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hmgb1P63158 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hmgb1P63158 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hmgb1P63158 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hmgb1P63158 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hmgb1P63158 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hmgb1P63158 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Hmgb1P63158 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hmgb1P63158 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC20.84■□□□□ 0.93
Hmgb1P63158 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hmgb1P63158 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.84■□□□□ 0.93
Hmgb1P63158 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Hmgb1P63158 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms