Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm20100-201ENSMUST00000209418 2272 ntBASIC18.19■□□□□ 0.5
Cdx2P43241 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdx2P43241 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cdx2P43241 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdx2P43241 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cdx2P43241 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cdx2P43241 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdx2P43241 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC18.18■□□□□ 0.5
Cdx2P43241 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Cdx2P43241 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
Cdx2P43241 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Cdx2P43241 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Cdx2P43241 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdx2P43241 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cdx2P43241 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdx2P43241 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cdx2P43241 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC18.17■□□□□ 0.5
Cdx2P43241 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cdx2P43241 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdx2P43241 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC18.17■□□□□ 0.5
Cdx2P43241 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cdx2P43241 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC18.17■□□□□ 0.5
Cdx2P43241 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC18.17■□□□□ 0.5
Cdx2P43241 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdx2P43241 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdx2P43241 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Cdx2P43241 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdx2P43241 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Cdx2P43241 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Cdx2P43241 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdx2P43241 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Cdx2P43241 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdx2P43241 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Cdx2P43241 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
Cdx2P43241 Arhgef33-211ENSMUST00000225658 473 ntBASIC18.16■□□□□ 0.5
Cdx2P43241 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdx2P43241 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC18.16■□□□□ 0.5
Cdx2P43241 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cdx2P43241 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdx2P43241 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Cdx2P43241 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdx2P43241 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdx2P43241 Dio3-201ENSMUST00000097228 1449 ntBASIC18.15■□□□□ 0.5
Cdx2P43241 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC18.15■□□□□ 0.5
Cdx2P43241 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdx2P43241 Gm6576-201ENSMUST00000169678 883 ntBASIC18.15■□□□□ 0.5
Cdx2P43241 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdx2P43241 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdx2P43241 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cdx2P43241 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdx2P43241 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cdx2P43241 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Cdx2P43241 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
Cdx2P43241 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Cdx2P43241 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Cdx2P43241 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdx2P43241 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC18.14■□□□□ 0.49
Cdx2P43241 Gm7977-201ENSMUST00000193787 748 ntBASIC18.14■□□□□ 0.49
Cdx2P43241 AC135963.1-201ENSMUST00000211640 717 ntBASIC18.14■□□□□ 0.49
Cdx2P43241 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdx2P43241 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Cdx2P43241 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Cdx2P43241 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdx2P43241 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC18.13■□□□□ 0.49
Cdx2P43241 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC18.13■□□□□ 0.49
Cdx2P43241 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdx2P43241 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC18.13■□□□□ 0.49
Cdx2P43241 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdx2P43241 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdx2P43241 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cdx2P43241 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdx2P43241 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Cdx2P43241 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdx2P43241 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Cdx2P43241 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cdx2P43241 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Cdx2P43241 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC18.12■□□□□ 0.49
Cdx2P43241 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC18.12■□□□□ 0.49
Cdx2P43241 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC18.12■□□□□ 0.49
Cdx2P43241 Gm32699-201ENSMUST00000221728 1988 ntBASIC18.11■□□□□ 0.49
Cdx2P43241 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdx2P43241 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdx2P43241 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdx2P43241 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdx2P43241 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Cdx2P43241 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdx2P43241 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC18.11■□□□□ 0.49
Cdx2P43241 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cdx2P43241 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdx2P43241 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cdx2P43241 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdx2P43241 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdx2P43241 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
Cdx2P43241 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Cdx2P43241 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC18.1■□□□□ 0.49
Cdx2P43241 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdx2P43241 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdx2P43241 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC18.1■□□□□ 0.49
Cdx2P43241 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cdx2P43241 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms