Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Cdx1P18111 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Cdx1P18111 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cdx1P18111 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Cdx1P18111 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cdx1P18111 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cdx1P18111 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cdx1P18111 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC15.27■□□□□ 0.04
Cdx1P18111 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cdx1P18111 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cdx1P18111 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Cdx1P18111 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Cdx1P18111 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cdx1P18111 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cdx1P18111 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cdx1P18111 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cdx1P18111 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cdx1P18111 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC15.26■□□□□ 0.03
Cdx1P18111 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC15.26■□□□□ 0.03
Cdx1P18111 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdx1P18111 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdx1P18111 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC15.26■□□□□ 0.03
Cdx1P18111 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdx1P18111 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC15.26■□□□□ 0.03
Cdx1P18111 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdx1P18111 AC122428.2-201ENSMUST00000216321 1832 ntBASIC15.26■□□□□ 0.03
Cdx1P18111 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC15.26■□□□□ 0.03
Cdx1P18111 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cdx1P18111 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdx1P18111 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdx1P18111 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdx1P18111 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdx1P18111 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdx1P18111 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdx1P18111 AC140930.3-201ENSMUST00000222935 274 ntBASIC15.25■□□□□ 0.03
Cdx1P18111 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdx1P18111 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
Cdx1P18111 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Cdx1P18111 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdx1P18111 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC15.25■□□□□ 0.03
Cdx1P18111 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdx1P18111 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdx1P18111 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdx1P18111 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Cdx1P18111 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdx1P18111 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdx1P18111 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdx1P18111 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Cdx1P18111 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdx1P18111 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdx1P18111 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC15.24■□□□□ 0.03
Cdx1P18111 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Cdx1P18111 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC15.24■□□□□ 0.03
Cdx1P18111 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdx1P18111 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdx1P18111 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdx1P18111 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cdx1P18111 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdx1P18111 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdx1P18111 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdx1P18111 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
Cdx1P18111 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdx1P18111 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Cdx1P18111 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Cdx1P18111 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdx1P18111 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Cdx1P18111 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdx1P18111 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdx1P18111 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdx1P18111 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdx1P18111 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC15.23■□□□□ 0.03
Cdx1P18111 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdx1P18111 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC15.23■□□□□ 0.03
Cdx1P18111 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Cdx1P18111 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdx1P18111 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdx1P18111 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Cdx1P18111 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdx1P18111 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdx1P18111 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdx1P18111 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdx1P18111 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Cdx1P18111 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC15.22■□□□□ 0.03
Cdx1P18111 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdx1P18111 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cdx1P18111 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Cdx1P18111 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdx1P18111 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdx1P18111 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdx1P18111 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cdx1P18111 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdx1P18111 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC15.22■□□□□ 0.03
Cdx1P18111 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdx1P18111 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdx1P18111 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdx1P18111 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC15.22■□□□□ 0.03
Cdx1P18111 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdx1P18111 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cdx1P18111 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdx1P18111 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 69.7 ms