Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm15565-201ENSMUST00000118890 427 ntBASIC22.54■■□□□ 1.2
Col1a1P11087 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC22.54■■□□□ 1.2
Col1a1P11087 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Col1a1P11087 Gm2399-201ENSMUST00000104944 225 ntBASIC22.53■■□□□ 1.2
Col1a1P11087 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Col1a1P11087 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Col1a1P11087 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC22.53■■□□□ 1.2
Col1a1P11087 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
Col1a1P11087 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Col1a1P11087 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Col1a1P11087 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Col1a1P11087 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Col1a1P11087 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Col1a1P11087 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC22.52■■□□□ 1.2
Col1a1P11087 Mir1199-201ENSMUST00000117015 119 ntBASIC22.52■■□□□ 1.2
Col1a1P11087 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC22.52■■□□□ 1.2
Col1a1P11087 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC22.52■■□□□ 1.2
Col1a1P11087 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
Col1a1P11087 Gm26971-201ENSMUST00000182423 1072 ntBASIC22.52■■□□□ 1.2
Col1a1P11087 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Col1a1P11087 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Col1a1P11087 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC22.51■■□□□ 1.19
Col1a1P11087 Gm9484-201ENSMUST00000195892 1159 ntBASIC22.51■■□□□ 1.19
Col1a1P11087 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC22.51■■□□□ 1.19
Col1a1P11087 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Col1a1P11087 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Col1a1P11087 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Col1a1P11087 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Col1a1P11087 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Col1a1P11087 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Col1a1P11087 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
Col1a1P11087 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC22.5■■□□□ 1.19
Col1a1P11087 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC22.5■■□□□ 1.19
Col1a1P11087 Gm15378-201ENSMUST00000121894 207 ntBASIC22.5■■□□□ 1.19
Col1a1P11087 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC22.5■■□□□ 1.19
Col1a1P11087 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Col1a1P11087 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Col1a1P11087 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Col1a1P11087 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Col1a1P11087 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
Col1a1P11087 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Col1a1P11087 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Col1a1P11087 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Col1a1P11087 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Col1a1P11087 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Col1a1P11087 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Col1a1P11087 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC22.49■■□□□ 1.19
Col1a1P11087 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
Col1a1P11087 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Col1a1P11087 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Col1a1P11087 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Col1a1P11087 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC22.48■■□□□ 1.19
Col1a1P11087 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC22.48■■□□□ 1.19
Col1a1P11087 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC22.48■■□□□ 1.19
Col1a1P11087 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Col1a1P11087 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Col1a1P11087 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Col1a1P11087 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC22.48■■□□□ 1.19
Col1a1P11087 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Col1a1P11087 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC22.48■■□□□ 1.19
Col1a1P11087 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC22.47■■□□□ 1.19
Col1a1P11087 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Col1a1P11087 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Col1a1P11087 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
Col1a1P11087 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
Col1a1P11087 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC22.47■■□□□ 1.19
Col1a1P11087 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Col1a1P11087 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
Col1a1P11087 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Col1a1P11087 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC22.47■■□□□ 1.19
Col1a1P11087 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
Col1a1P11087 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Col1a1P11087 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Col1a1P11087 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Col1a1P11087 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
Col1a1P11087 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
Col1a1P11087 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
Col1a1P11087 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Col1a1P11087 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC22.46■■□□□ 1.19
Col1a1P11087 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
Col1a1P11087 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC22.46■■□□□ 1.19
Col1a1P11087 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
Col1a1P11087 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
Col1a1P11087 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC22.46■■□□□ 1.19
Col1a1P11087 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Col1a1P11087 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Col1a1P11087 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
Col1a1P11087 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
Col1a1P11087 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC22.45■■□□□ 1.18
Col1a1P11087 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Col1a1P11087 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Col1a1P11087 Gm13158-201ENSMUST00000122007 736 ntBASIC22.45■■□□□ 1.18
Col1a1P11087 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
Col1a1P11087 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC22.45■■□□□ 1.18
Col1a1P11087 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Col1a1P11087 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Col1a1P11087 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
Col1a1P11087 Gm43672-201ENSMUST00000199072 1731 ntBASIC22.44■■□□□ 1.18
Col1a1P11087 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC22.44■■□□□ 1.18
Col1a1P11087 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms