Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Hmgb3O54879 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Hmgb3O54879 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Hmgb3O54879 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Hmgb3O54879 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Hmgb3O54879 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Hmgb3O54879 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Hmgb3O54879 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Hmgb3O54879 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Hmgb3O54879 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Hmgb3O54879 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Hmgb3O54879 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC15.8■□□□□ 0.12
Hmgb3O54879 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Hmgb3O54879 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Hmgb3O54879 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Hmgb3O54879 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
Hmgb3O54879 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Hmgb3O54879 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Hmgb3O54879 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC15.8■□□□□ 0.12
Hmgb3O54879 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Hmgb3O54879 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Hmgb3O54879 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Hmgb3O54879 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
Hmgb3O54879 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Hmgb3O54879 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Hmgb3O54879 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Hmgb3O54879 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Hmgb3O54879 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Hmgb3O54879 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Hmgb3O54879 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Hmgb3O54879 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Hmgb3O54879 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Hmgb3O54879 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Hmgb3O54879 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Hmgb3O54879 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Hmgb3O54879 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC15.79■□□□□ 0.12
Hmgb3O54879 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Hmgb3O54879 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Hmgb3O54879 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Hmgb3O54879 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Hmgb3O54879 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Hmgb3O54879 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Hmgb3O54879 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
Hmgb3O54879 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Hmgb3O54879 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Hmgb3O54879 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Hmgb3O54879 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Hmgb3O54879 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Hmgb3O54879 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Hmgb3O54879 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Hmgb3O54879 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Hmgb3O54879 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Hmgb3O54879 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Hmgb3O54879 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Hmgb3O54879 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Hmgb3O54879 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Hmgb3O54879 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Hmgb3O54879 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Hmgb3O54879 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC15.77■□□□□ 0.12
Hmgb3O54879 Gm12366-201ENSMUST00000121722 873 ntBASIC15.77■□□□□ 0.12
Hmgb3O54879 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC15.77■□□□□ 0.12
Hmgb3O54879 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Hmgb3O54879 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Hmgb3O54879 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC15.77■□□□□ 0.12
Hmgb3O54879 Gm5786-201ENSMUST00000085368 882 ntBASIC15.77■□□□□ 0.12
Hmgb3O54879 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC15.77■□□□□ 0.11
Hmgb3O54879 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Hmgb3O54879 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Hmgb3O54879 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Hmgb3O54879 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
Hmgb3O54879 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Hmgb3O54879 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Hmgb3O54879 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Hmgb3O54879 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Hmgb3O54879 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Hmgb3O54879 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Hmgb3O54879 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC15.75■□□□□ 0.11
Hmgb3O54879 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC15.75■□□□□ 0.11
Hmgb3O54879 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Hmgb3O54879 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Hmgb3O54879 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Hmgb3O54879 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Hmgb3O54879 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Hmgb3O54879 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms