Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC19.62■□□□□ 0.73
Sdc4O35988 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Sdc4O35988 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Sdc4O35988 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Sdc4O35988 Gm5075-201ENSMUST00000196916 622 ntBASIC19.62■□□□□ 0.73
Sdc4O35988 CT025689.6-201ENSMUST00000224991 1104 ntBASIC19.62■□□□□ 0.73
Sdc4O35988 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
Sdc4O35988 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC19.62■□□□□ 0.73
Sdc4O35988 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC19.62■□□□□ 0.73
Sdc4O35988 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sdc4O35988 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Sdc4O35988 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sdc4O35988 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sdc4O35988 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC19.61■□□□□ 0.73
Sdc4O35988 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC19.61■□□□□ 0.73
Sdc4O35988 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC19.61■□□□□ 0.73
Sdc4O35988 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC19.61■□□□□ 0.73
Sdc4O35988 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC19.61■□□□□ 0.73
Sdc4O35988 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Sdc4O35988 Notumos-201ENSMUST00000151998 2659 ntBASIC19.61■□□□□ 0.73
Sdc4O35988 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Sdc4O35988 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Sdc4O35988 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Sdc4O35988 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sdc4O35988 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sdc4O35988 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sdc4O35988 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sdc4O35988 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sdc4O35988 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sdc4O35988 Nespas-201ENSMUST00000143738 1083 ntBASIC19.6■□□□□ 0.73
Sdc4O35988 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Sdc4O35988 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sdc4O35988 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Sdc4O35988 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Sdc4O35988 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sdc4O35988 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC19.6■□□□□ 0.73
Sdc4O35988 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Sdc4O35988 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Sdc4O35988 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Sdc4O35988 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Sdc4O35988 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Sdc4O35988 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC19.59■□□□□ 0.73
Sdc4O35988 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Sdc4O35988 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
Sdc4O35988 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Sdc4O35988 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Sdc4O35988 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Sdc4O35988 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Sdc4O35988 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Sdc4O35988 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Sdc4O35988 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC19.58■□□□□ 0.72
Sdc4O35988 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Sdc4O35988 Gm6365-201ENSMUST00000054711 744 ntBASIC19.58■□□□□ 0.72
Sdc4O35988 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.72
Sdc4O35988 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC19.58■□□□□ 0.72
Sdc4O35988 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sdc4O35988 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sdc4O35988 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC19.57■□□□□ 0.72
Sdc4O35988 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC19.57■□□□□ 0.72
Sdc4O35988 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sdc4O35988 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sdc4O35988 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Sdc4O35988 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Sdc4O35988 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sdc4O35988 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sdc4O35988 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sdc4O35988 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Sdc4O35988 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sdc4O35988 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sdc4O35988 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sdc4O35988 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sdc4O35988 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sdc4O35988 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sdc4O35988 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Sdc4O35988 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Sdc4O35988 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC19.56■□□□□ 0.72
Sdc4O35988 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sdc4O35988 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sdc4O35988 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sdc4O35988 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Sdc4O35988 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Sdc4O35988 Gm32699-201ENSMUST00000221728 1988 ntBASIC19.55■□□□□ 0.72
Sdc4O35988 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Sdc4O35988 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Sdc4O35988 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Sdc4O35988 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Sdc4O35988 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Sdc4O35988 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Sdc4O35988 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Sdc4O35988 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
Sdc4O35988 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Sdc4O35988 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC19.55■□□□□ 0.72
Sdc4O35988 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Sdc4O35988 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Sdc4O35988 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Sdc4O35988 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
Sdc4O35988 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Sdc4O35988 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Sdc4O35988 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Sdc4O35988 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms