Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Pcdh1F7BJK1 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Pcdh1F7BJK1 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Pcdh1F7BJK1 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Pcdh1F7BJK1 Grk6-206ENSMUST00000224995 2971 ntBASIC17.12■□□□□ 0.33
Pcdh1F7BJK1 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Pcdh1F7BJK1 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pcdh1F7BJK1 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pcdh1F7BJK1 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pcdh1F7BJK1 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pcdh1F7BJK1 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pcdh1F7BJK1 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Pcdh1F7BJK1 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Pcdh1F7BJK1 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pcdh1F7BJK1 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Pcdh1F7BJK1 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Rarb-207ENSMUST00000225921 2756 ntBASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Pcdh1F7BJK1 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC17.09■□□□□ 0.33
Pcdh1F7BJK1 Dmtn-210ENSMUST00000228824 2377 ntBASIC17.09■□□□□ 0.33
Pcdh1F7BJK1 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdh1F7BJK1 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdh1F7BJK1 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdh1F7BJK1 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdh1F7BJK1 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
Pcdh1F7BJK1 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Pcdh1F7BJK1 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdh1F7BJK1 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdh1F7BJK1 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdh1F7BJK1 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdh1F7BJK1 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdh1F7BJK1 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdh1F7BJK1 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Pcdh1F7BJK1 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Pcdh1F7BJK1 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Pcdh1F7BJK1 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Pcdh1F7BJK1 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Pcdh1F7BJK1 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Pcdh1F7BJK1 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Pcdh1F7BJK1 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Pcdh1F7BJK1 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC17.08■□□□□ 0.32
Pcdh1F7BJK1 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Pcdh1F7BJK1 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Pcdh1F7BJK1 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Pcdh1F7BJK1 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdh1F7BJK1 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdh1F7BJK1 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdh1F7BJK1 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Pcdh1F7BJK1 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdh1F7BJK1 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdh1F7BJK1 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdh1F7BJK1 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdh1F7BJK1 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
Pcdh1F7BJK1 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Pcdh1F7BJK1 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Pcdh1F7BJK1 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC17.05■□□□□ 0.32
Pcdh1F7BJK1 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Pcdh1F7BJK1 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Pcdh1F7BJK1 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Pcdh1F7BJK1 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms