Protein–RNA interactions for Protein: A0A0B4J1K2

Trav9-4, T cell receptor alpha variable 9-4 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9-4A0A0B4J1K2 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav9-4A0A0B4J1K2 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC14.28□□□□□ -0.12
Trav9-4A0A0B4J1K2 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trav9-4A0A0B4J1K2 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav9-4A0A0B4J1K2 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav9-4A0A0B4J1K2 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Trav9-4A0A0B4J1K2 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trav9-4A0A0B4J1K2 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trav9-4A0A0B4J1K2 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav9-4A0A0B4J1K2 CT030146.1-201ENSMUST00000220919 217 ntBASIC14.28□□□□□ -0.12
Trav9-4A0A0B4J1K2 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav9-4A0A0B4J1K2 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav9-4A0A0B4J1K2 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav9-4A0A0B4J1K2 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav9-4A0A0B4J1K2 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trav9-4A0A0B4J1K2 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC14.27□□□□□ -0.12
Trav9-4A0A0B4J1K2 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trav9-4A0A0B4J1K2 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trav9-4A0A0B4J1K2 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trav9-4A0A0B4J1K2 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
Trav9-4A0A0B4J1K2 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.12
Trav9-4A0A0B4J1K2 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC14.27□□□□□ -0.13
Trav9-4A0A0B4J1K2 Gm9988-201ENSMUST00000069786 435 ntBASIC14.27□□□□□ -0.13
Trav9-4A0A0B4J1K2 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav9-4A0A0B4J1K2 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav9-4A0A0B4J1K2 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Trav9-4A0A0B4J1K2 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav9-4A0A0B4J1K2 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav9-4A0A0B4J1K2 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Trav9-4A0A0B4J1K2 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC14.27□□□□□ -0.13
Trav9-4A0A0B4J1K2 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Gm14281-201ENSMUST00000121700 1294 ntBASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trav9-4A0A0B4J1K2 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav9-4A0A0B4J1K2 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav9-4A0A0B4J1K2 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav9-4A0A0B4J1K2 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC14.23□□□□□ -0.13
Trav9-4A0A0B4J1K2 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav9-4A0A0B4J1K2 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav9-4A0A0B4J1K2 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trav9-4A0A0B4J1K2 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav9-4A0A0B4J1K2 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms