Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Scn11aQ9R053 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Scn11aQ9R053 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Scn11aQ9R053 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Scn11aQ9R053 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Scn11aQ9R053 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
Scn11aQ9R053 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC23■■□□□ 1.27
Scn11aQ9R053 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Scn11aQ9R053 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC23■■□□□ 1.27
Scn11aQ9R053 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC23■■□□□ 1.27
Scn11aQ9R053 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Scn11aQ9R053 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC23■■□□□ 1.27
Scn11aQ9R053 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC23■■□□□ 1.27
Scn11aQ9R053 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Scn11aQ9R053 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC22.99■■□□□ 1.27
Scn11aQ9R053 Gm13181-201ENSMUST00000120117 1069 ntBASIC22.99■■□□□ 1.27
Scn11aQ9R053 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
Scn11aQ9R053 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
Scn11aQ9R053 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Scn11aQ9R053 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
Scn11aQ9R053 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Scn11aQ9R053 Gm37352-201ENSMUST00000193908 2181 ntBASIC22.99■■□□□ 1.27
Scn11aQ9R053 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Scn11aQ9R053 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC22.99■■□□□ 1.27
Scn11aQ9R053 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
Scn11aQ9R053 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Scn11aQ9R053 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Scn11aQ9R053 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
Scn11aQ9R053 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
Scn11aQ9R053 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
Scn11aQ9R053 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Scn11aQ9R053 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
Scn11aQ9R053 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Scn11aQ9R053 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Scn11aQ9R053 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Scn11aQ9R053 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Scn11aQ9R053 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
Scn11aQ9R053 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Scn11aQ9R053 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Scn11aQ9R053 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Scn11aQ9R053 Gm37563-201ENSMUST00000192580 1513 ntBASIC22.97■■□□□ 1.27
Scn11aQ9R053 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Gm29994-201ENSMUST00000195495 1193 ntBASIC22.96■■□□□ 1.27
Scn11aQ9R053 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Scn11aQ9R053 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC22.96■■□□□ 1.27
Scn11aQ9R053 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
Scn11aQ9R053 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.27
Scn11aQ9R053 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC22.95■■□□□ 1.26
Scn11aQ9R053 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Scn11aQ9R053 AC135637.1-201ENSMUST00000227750 365 ntBASIC22.95■■□□□ 1.26
Scn11aQ9R053 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Scn11aQ9R053 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Scn11aQ9R053 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
Scn11aQ9R053 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Scn11aQ9R053 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Scn11aQ9R053 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Scn11aQ9R053 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
Scn11aQ9R053 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Scn11aQ9R053 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC22.94■■□□□ 1.26
Scn11aQ9R053 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC22.94■■□□□ 1.26
Scn11aQ9R053 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Scn11aQ9R053 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Scn11aQ9R053 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Scn11aQ9R053 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC22.94■■□□□ 1.26
Scn11aQ9R053 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Scn11aQ9R053 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
Scn11aQ9R053 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Scn11aQ9R053 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
Scn11aQ9R053 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC22.93■■□□□ 1.26
Scn11aQ9R053 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC22.93■■□□□ 1.26
Scn11aQ9R053 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
Scn11aQ9R053 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC22.93■■□□□ 1.26
Scn11aQ9R053 Gm26971-201ENSMUST00000182423 1072 ntBASIC22.93■■□□□ 1.26
Scn11aQ9R053 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC22.93■■□□□ 1.26
Scn11aQ9R053 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Scn11aQ9R053 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Scn11aQ9R053 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC22.92■■□□□ 1.26
Scn11aQ9R053 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Scn11aQ9R053 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Scn11aQ9R053 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Scn11aQ9R053 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Scn11aQ9R053 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Scn11aQ9R053 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Scn11aQ9R053 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms