Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim39Q9ESN2 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC17.76■□□□□ 0.43
Trim39Q9ESN2 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC17.76■□□□□ 0.43
Trim39Q9ESN2 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim39Q9ESN2 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC17.76■□□□□ 0.43
Trim39Q9ESN2 Gm21956-201ENSMUST00000179946 522 ntBASIC17.76■□□□□ 0.43
Trim39Q9ESN2 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
Trim39Q9ESN2 Gm43034-201ENSMUST00000198678 1364 ntBASIC17.76■□□□□ 0.43
Trim39Q9ESN2 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC17.76■□□□□ 0.43
Trim39Q9ESN2 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC17.75■□□□□ 0.43
Trim39Q9ESN2 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim39Q9ESN2 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim39Q9ESN2 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC17.75■□□□□ 0.43
Trim39Q9ESN2 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim39Q9ESN2 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim39Q9ESN2 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC17.75■□□□□ 0.43
Trim39Q9ESN2 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim39Q9ESN2 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim39Q9ESN2 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim39Q9ESN2 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim39Q9ESN2 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim39Q9ESN2 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim39Q9ESN2 Gm43909-201ENSMUST00000203443 1876 ntBASIC17.75■□□□□ 0.43
Trim39Q9ESN2 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim39Q9ESN2 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim39Q9ESN2 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim39Q9ESN2 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Trim39Q9ESN2 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim39Q9ESN2 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Trim39Q9ESN2 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim39Q9ESN2 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim39Q9ESN2 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim39Q9ESN2 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim39Q9ESN2 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
Trim39Q9ESN2 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim39Q9ESN2 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim39Q9ESN2 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim39Q9ESN2 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim39Q9ESN2 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim39Q9ESN2 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim39Q9ESN2 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC17.73■□□□□ 0.43
Trim39Q9ESN2 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim39Q9ESN2 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Trim39Q9ESN2 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC17.73■□□□□ 0.43
Trim39Q9ESN2 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Trim39Q9ESN2 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim39Q9ESN2 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC17.73■□□□□ 0.43
Trim39Q9ESN2 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC17.73■□□□□ 0.43
Trim39Q9ESN2 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim39Q9ESN2 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Trim39Q9ESN2 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim39Q9ESN2 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.73■□□□□ 0.43
Trim39Q9ESN2 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim39Q9ESN2 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim39Q9ESN2 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Trim39Q9ESN2 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC17.72■□□□□ 0.43
Trim39Q9ESN2 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim39Q9ESN2 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim39Q9ESN2 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC17.72■□□□□ 0.43
Trim39Q9ESN2 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Trim39Q9ESN2 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim39Q9ESN2 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim39Q9ESN2 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim39Q9ESN2 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim39Q9ESN2 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim39Q9ESN2 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim39Q9ESN2 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC17.71■□□□□ 0.43
Trim39Q9ESN2 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC17.71■□□□□ 0.43
Trim39Q9ESN2 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim39Q9ESN2 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Trim39Q9ESN2 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim39Q9ESN2 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim39Q9ESN2 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim39Q9ESN2 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim39Q9ESN2 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Trim39Q9ESN2 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Trim39Q9ESN2 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim39Q9ESN2 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim39Q9ESN2 Gm6085-201ENSMUST00000182774 1470 ntBASIC17.7■□□□□ 0.42
Trim39Q9ESN2 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Trim39Q9ESN2 Cdkn3-203ENSMUST00000227149 1952 ntBASIC17.7■□□□□ 0.42
Trim39Q9ESN2 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim39Q9ESN2 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim39Q9ESN2 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim39Q9ESN2 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim39Q9ESN2 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim39Q9ESN2 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
Trim39Q9ESN2 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Trim39Q9ESN2 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim39Q9ESN2 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Trim39Q9ESN2 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Trim39Q9ESN2 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim39Q9ESN2 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
Trim39Q9ESN2 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
Trim39Q9ESN2 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC17.69■□□□□ 0.42
Trim39Q9ESN2 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim39Q9ESN2 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim39Q9ESN2 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim39Q9ESN2 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim39Q9ESN2 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms