Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Sf3b1Q99NB9 Gm13534-201ENSMUST00000121169 513 ntBASIC20.32■□□□□ 0.84
Sf3b1Q99NB9 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC20.32■□□□□ 0.84
Sf3b1Q99NB9 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC20.32■□□□□ 0.84
Sf3b1Q99NB9 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Sf3b1Q99NB9 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Sf3b1Q99NB9 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Sf3b1Q99NB9 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sf3b1Q99NB9 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sf3b1Q99NB9 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Sf3b1Q99NB9 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Sf3b1Q99NB9 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Sf3b1Q99NB9 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Sf3b1Q99NB9 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.31■□□□□ 0.84
Sf3b1Q99NB9 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.31■□□□□ 0.84
Sf3b1Q99NB9 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.31■□□□□ 0.84
Sf3b1Q99NB9 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sf3b1Q99NB9 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
Sf3b1Q99NB9 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sf3b1Q99NB9 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sf3b1Q99NB9 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Sf3b1Q99NB9 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sf3b1Q99NB9 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sf3b1Q99NB9 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Sf3b1Q99NB9 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Sf3b1Q99NB9 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Sf3b1Q99NB9 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.3■□□□□ 0.84
Sf3b1Q99NB9 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
Sf3b1Q99NB9 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.3■□□□□ 0.84
Sf3b1Q99NB9 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sf3b1Q99NB9 Gm7290-201ENSMUST00000104990 617 ntBASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Gm12918-201ENSMUST00000120234 636 ntBASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Gm7860-201ENSMUST00000121190 879 ntBASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Gm15710-201ENSMUST00000121821 636 ntBASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Gm6420-201ENSMUST00000193885 723 ntBASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Gm5075-201ENSMUST00000196916 622 ntBASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sf3b1Q99NB9 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.28■□□□□ 0.84
Sf3b1Q99NB9 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Sf3b1Q99NB9 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sf3b1Q99NB9 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sf3b1Q99NB9 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sf3b1Q99NB9 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Sf3b1Q99NB9 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sf3b1Q99NB9 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sf3b1Q99NB9 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sf3b1Q99NB9 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Sf3b1Q99NB9 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sf3b1Q99NB9 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Sf3b1Q99NB9 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
Sf3b1Q99NB9 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sf3b1Q99NB9 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Sf3b1Q99NB9 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sf3b1Q99NB9 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC20.27■□□□□ 0.84
Sf3b1Q99NB9 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sf3b1Q99NB9 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sf3b1Q99NB9 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sf3b1Q99NB9 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sf3b1Q99NB9 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.27■□□□□ 0.83
Sf3b1Q99NB9 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.83
Sf3b1Q99NB9 Gm12441-201ENSMUST00000121806 588 ntBASIC20.27■□□□□ 0.83
Sf3b1Q99NB9 Nespas-201ENSMUST00000143738 1083 ntBASIC20.27■□□□□ 0.83
Sf3b1Q99NB9 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC20.27■□□□□ 0.83
Sf3b1Q99NB9 Gm3807-201ENSMUST00000193520 1168 ntBASIC20.27■□□□□ 0.83
Sf3b1Q99NB9 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Sf3b1Q99NB9 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Sf3b1Q99NB9 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sf3b1Q99NB9 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sf3b1Q99NB9 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Sf3b1Q99NB9 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Sf3b1Q99NB9 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sf3b1Q99NB9 Gm6365-201ENSMUST00000054711 744 ntBASIC20.26■□□□□ 0.83
Sf3b1Q99NB9 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Sf3b1Q99NB9 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sf3b1Q99NB9 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sf3b1Q99NB9 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Sf3b1Q99NB9 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sf3b1Q99NB9 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
Sf3b1Q99NB9 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Sf3b1Q99NB9 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.25■□□□□ 0.83
Sf3b1Q99NB9 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sf3b1Q99NB9 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sf3b1Q99NB9 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sf3b1Q99NB9 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms