Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Chmp7Q8R1T1 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Chmp7Q8R1T1 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC24.58■■□□□ 1.53
Chmp7Q8R1T1 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Chmp7Q8R1T1 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
Chmp7Q8R1T1 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC24.58■■□□□ 1.53
Chmp7Q8R1T1 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
Chmp7Q8R1T1 Gm13168-201ENSMUST00000121771 632 ntBASIC24.58■■□□□ 1.53
Chmp7Q8R1T1 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
Chmp7Q8R1T1 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Chmp7Q8R1T1 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC24.58■■□□□ 1.53
Chmp7Q8R1T1 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
Chmp7Q8R1T1 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
Chmp7Q8R1T1 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
Chmp7Q8R1T1 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Chmp7Q8R1T1 Gm37563-201ENSMUST00000192580 1513 ntBASIC24.57■■□□□ 1.52
Chmp7Q8R1T1 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Chmp7Q8R1T1 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Chmp7Q8R1T1 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Chmp7Q8R1T1 Gm37856-201ENSMUST00000191634 999 ntBASIC24.57■■□□□ 1.52
Chmp7Q8R1T1 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC24.57■■□□□ 1.52
Chmp7Q8R1T1 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Chmp7Q8R1T1 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC24.57■■□□□ 1.52
Chmp7Q8R1T1 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Chmp7Q8R1T1 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Chmp7Q8R1T1 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
Chmp7Q8R1T1 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Chmp7Q8R1T1 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
Chmp7Q8R1T1 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
Chmp7Q8R1T1 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC24.56■■□□□ 1.52
Chmp7Q8R1T1 Rab3c-203ENSMUST00000224180 967 ntBASIC24.56■■□□□ 1.52
Chmp7Q8R1T1 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
Chmp7Q8R1T1 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Chmp7Q8R1T1 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Chmp7Q8R1T1 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
Chmp7Q8R1T1 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Chmp7Q8R1T1 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Chmp7Q8R1T1 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
Chmp7Q8R1T1 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC24.55■■□□□ 1.52
Chmp7Q8R1T1 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
Chmp7Q8R1T1 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Chmp7Q8R1T1 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
Chmp7Q8R1T1 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC24.55■■□□□ 1.52
Chmp7Q8R1T1 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Chmp7Q8R1T1 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Chmp7Q8R1T1 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Chmp7Q8R1T1 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Chmp7Q8R1T1 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Chmp7Q8R1T1 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Chmp7Q8R1T1 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
Chmp7Q8R1T1 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Chmp7Q8R1T1 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Chmp7Q8R1T1 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Chmp7Q8R1T1 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Chmp7Q8R1T1 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Chmp7Q8R1T1 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
Chmp7Q8R1T1 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
Chmp7Q8R1T1 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Chmp7Q8R1T1 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Chmp7Q8R1T1 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Chmp7Q8R1T1 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
Chmp7Q8R1T1 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Chmp7Q8R1T1 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Chmp7Q8R1T1 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
Chmp7Q8R1T1 Trmt13-210ENSMUST00000198454 880 ntBASIC24.52■■□□□ 1.52
Chmp7Q8R1T1 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Chmp7Q8R1T1 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Chmp7Q8R1T1 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Chmp7Q8R1T1 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Chmp7Q8R1T1 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
Chmp7Q8R1T1 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC24.51■■□□□ 1.51
Chmp7Q8R1T1 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Chmp7Q8R1T1 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
Chmp7Q8R1T1 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
Chmp7Q8R1T1 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Chmp7Q8R1T1 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Chmp7Q8R1T1 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
Chmp7Q8R1T1 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Chmp7Q8R1T1 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
Chmp7Q8R1T1 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC24.51■■□□□ 1.51
Chmp7Q8R1T1 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
Chmp7Q8R1T1 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
Chmp7Q8R1T1 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Chmp7Q8R1T1 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Chmp7Q8R1T1 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
Chmp7Q8R1T1 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Chmp7Q8R1T1 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Chmp7Q8R1T1 Gm44878-201ENSMUST00000205812 1295 ntBASIC24.5■■□□□ 1.51
Chmp7Q8R1T1 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC24.5■■□□□ 1.51
Chmp7Q8R1T1 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC24.5■■□□□ 1.51
Chmp7Q8R1T1 Gm13509-201ENSMUST00000119733 1308 ntBASIC24.5■■□□□ 1.51
Chmp7Q8R1T1 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Chmp7Q8R1T1 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Chmp7Q8R1T1 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Chmp7Q8R1T1 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Chmp7Q8R1T1 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Chmp7Q8R1T1 Gm32699-201ENSMUST00000221728 1988 ntBASIC24.49■■□□□ 1.51
Chmp7Q8R1T1 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
Chmp7Q8R1T1 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC24.49■■□□□ 1.51
Chmp7Q8R1T1 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC24.49■■□□□ 1.51
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms