Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC26.42■■□□□ 1.82
Usp40Q8BWR4 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
Usp40Q8BWR4 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
Usp40Q8BWR4 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Usp40Q8BWR4 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
Usp40Q8BWR4 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Usp40Q8BWR4 Gm20049-201ENSMUST00000219950 730 ntBASIC26.41■■□□□ 1.82
Usp40Q8BWR4 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Usp40Q8BWR4 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Usp40Q8BWR4 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
Usp40Q8BWR4 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Usp40Q8BWR4 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
Usp40Q8BWR4 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Usp40Q8BWR4 AC122769.4-201ENSMUST00000228166 901 ntBASIC26.4■■□□□ 1.82
Usp40Q8BWR4 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
Usp40Q8BWR4 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC26.4■■□□□ 1.82
Usp40Q8BWR4 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
Usp40Q8BWR4 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
Usp40Q8BWR4 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Usp40Q8BWR4 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
Usp40Q8BWR4 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Usp40Q8BWR4 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Usp40Q8BWR4 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Usp40Q8BWR4 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC26.39■■□□□ 1.82
Usp40Q8BWR4 Gm26524-201ENSMUST00000192339 390 ntBASIC26.39■■□□□ 1.82
Usp40Q8BWR4 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC26.39■■□□□ 1.82
Usp40Q8BWR4 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Usp40Q8BWR4 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC26.39■■□□□ 1.82
Usp40Q8BWR4 Gm37563-201ENSMUST00000192580 1513 ntBASIC26.39■■□□□ 1.81
Usp40Q8BWR4 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
Usp40Q8BWR4 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.81
Usp40Q8BWR4 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
Usp40Q8BWR4 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.81
Usp40Q8BWR4 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Usp40Q8BWR4 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Usp40Q8BWR4 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Usp40Q8BWR4 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC26.38■■□□□ 1.81
Usp40Q8BWR4 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Usp40Q8BWR4 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Usp40Q8BWR4 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Usp40Q8BWR4 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Usp40Q8BWR4 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Usp40Q8BWR4 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
Usp40Q8BWR4 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC26.37■■□□□ 1.81
Usp40Q8BWR4 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC26.37■■□□□ 1.81
Usp40Q8BWR4 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC26.37■■□□□ 1.81
Usp40Q8BWR4 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
Usp40Q8BWR4 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Usp40Q8BWR4 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Usp40Q8BWR4 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC26.36■■□□□ 1.81
Usp40Q8BWR4 Gm20760-201ENSMUST00000179197 648 ntBASIC26.36■■□□□ 1.81
Usp40Q8BWR4 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Usp40Q8BWR4 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Usp40Q8BWR4 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC26.36■■□□□ 1.81
Usp40Q8BWR4 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
Usp40Q8BWR4 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Usp40Q8BWR4 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC26.35■■□□□ 1.81
Usp40Q8BWR4 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Usp40Q8BWR4 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC26.35■■□□□ 1.81
Usp40Q8BWR4 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Usp40Q8BWR4 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
Usp40Q8BWR4 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Usp40Q8BWR4 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
Usp40Q8BWR4 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC26.34■■□□□ 1.81
Usp40Q8BWR4 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Usp40Q8BWR4 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC26.34■■□□□ 1.81
Usp40Q8BWR4 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Usp40Q8BWR4 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Usp40Q8BWR4 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Usp40Q8BWR4 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
Usp40Q8BWR4 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Usp40Q8BWR4 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Usp40Q8BWR4 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC26.34■■□□□ 1.81
Usp40Q8BWR4 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
Usp40Q8BWR4 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Usp40Q8BWR4 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Usp40Q8BWR4 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Usp40Q8BWR4 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Usp40Q8BWR4 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Usp40Q8BWR4 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Usp40Q8BWR4 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Usp40Q8BWR4 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
Usp40Q8BWR4 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC26.33■■□□□ 1.8
Usp40Q8BWR4 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC26.32■■□□□ 1.8
Usp40Q8BWR4 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Usp40Q8BWR4 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC26.32■■□□□ 1.8
Usp40Q8BWR4 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Usp40Q8BWR4 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Usp40Q8BWR4 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Usp40Q8BWR4 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Usp40Q8BWR4 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Usp40Q8BWR4 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Usp40Q8BWR4 Gm44672-201ENSMUST00000206944 1098 ntBASIC26.31■■□□□ 1.8
Usp40Q8BWR4 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Usp40Q8BWR4 Gm45640-201ENSMUST00000210665 1896 ntBASIC26.31■■□□□ 1.8
Usp40Q8BWR4 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
Usp40Q8BWR4 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Usp40Q8BWR4 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Usp40Q8BWR4 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
Usp40Q8BWR4 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms