Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC20.02■□□□□ 0.8
Shkbp1Q6P7W2 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Shkbp1Q6P7W2 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Shkbp1Q6P7W2 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Shkbp1Q6P7W2 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Shkbp1Q6P7W2 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Shkbp1Q6P7W2 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Shkbp1Q6P7W2 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Shkbp1Q6P7W2 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Shkbp1Q6P7W2 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC20.01■□□□□ 0.79
Shkbp1Q6P7W2 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC20.01■□□□□ 0.79
Shkbp1Q6P7W2 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC20.01■□□□□ 0.79
Shkbp1Q6P7W2 Gm22240-201ENSMUST00000175225 82 ntBASIC20.01■□□□□ 0.79
Shkbp1Q6P7W2 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Shkbp1Q6P7W2 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Shkbp1Q6P7W2 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.01■□□□□ 0.79
Shkbp1Q6P7W2 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Shkbp1Q6P7W2 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Shkbp1Q6P7W2 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Shkbp1Q6P7W2 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC20■□□□□ 0.79
Shkbp1Q6P7W2 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC20■□□□□ 0.79
Shkbp1Q6P7W2 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC20■□□□□ 0.79
Shkbp1Q6P7W2 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Shkbp1Q6P7W2 Gm44672-201ENSMUST00000206944 1098 ntBASIC20■□□□□ 0.79
Shkbp1Q6P7W2 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Shkbp1Q6P7W2 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20■□□□□ 0.79
Shkbp1Q6P7W2 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Shkbp1Q6P7W2 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Shkbp1Q6P7W2 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20■□□□□ 0.79
Shkbp1Q6P7W2 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Shkbp1Q6P7W2 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Shkbp1Q6P7W2 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Shkbp1Q6P7W2 Gm26971-201ENSMUST00000182423 1072 ntBASIC19.99■□□□□ 0.79
Shkbp1Q6P7W2 Gm37856-201ENSMUST00000191634 999 ntBASIC19.99■□□□□ 0.79
Shkbp1Q6P7W2 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Shkbp1Q6P7W2 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Shkbp1Q6P7W2 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Shkbp1Q6P7W2 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Shkbp1Q6P7W2 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Shkbp1Q6P7W2 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Shkbp1Q6P7W2 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Shkbp1Q6P7W2 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Shkbp1Q6P7W2 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Shkbp1Q6P7W2 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Shkbp1Q6P7W2 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Shkbp1Q6P7W2 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC19.98■□□□□ 0.79
Shkbp1Q6P7W2 Gm8520-201ENSMUST00000186517 868 ntBASIC19.98■□□□□ 0.79
Shkbp1Q6P7W2 Rab3c-203ENSMUST00000224180 967 ntBASIC19.98■□□□□ 0.79
Shkbp1Q6P7W2 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC19.98■□□□□ 0.79
Shkbp1Q6P7W2 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Shkbp1Q6P7W2 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Shkbp1Q6P7W2 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Shkbp1Q6P7W2 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Shkbp1Q6P7W2 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC19.97■□□□□ 0.79
Shkbp1Q6P7W2 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Shkbp1Q6P7W2 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Shkbp1Q6P7W2 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Shkbp1Q6P7W2 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC19.97■□□□□ 0.79
Shkbp1Q6P7W2 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC19.97■□□□□ 0.79
Shkbp1Q6P7W2 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Shkbp1Q6P7W2 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Shkbp1Q6P7W2 AC135637.1-201ENSMUST00000227750 365 ntBASIC19.97■□□□□ 0.79
Shkbp1Q6P7W2 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Shkbp1Q6P7W2 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Shkbp1Q6P7W2 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC19.97■□□□□ 0.79
Shkbp1Q6P7W2 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Shkbp1Q6P7W2 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC19.97■□□□□ 0.79
Shkbp1Q6P7W2 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Shkbp1Q6P7W2 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Shkbp1Q6P7W2 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Shkbp1Q6P7W2 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shkbp1Q6P7W2 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC19.96■□□□□ 0.79
Shkbp1Q6P7W2 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shkbp1Q6P7W2 Gm13509-201ENSMUST00000119733 1308 ntBASIC19.96■□□□□ 0.79
Shkbp1Q6P7W2 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Shkbp1Q6P7W2 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
Shkbp1Q6P7W2 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
Shkbp1Q6P7W2 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Shkbp1Q6P7W2 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shkbp1Q6P7W2 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Shkbp1Q6P7W2 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Shkbp1Q6P7W2 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shkbp1Q6P7W2 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Shkbp1Q6P7W2 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Shkbp1Q6P7W2 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Shkbp1Q6P7W2 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Shkbp1Q6P7W2 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC19.94■□□□□ 0.78
Shkbp1Q6P7W2 Gm13168-201ENSMUST00000121771 632 ntBASIC19.94■□□□□ 0.78
Shkbp1Q6P7W2 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Shkbp1Q6P7W2 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Shkbp1Q6P7W2 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Shkbp1Q6P7W2 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Shkbp1Q6P7W2 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Shkbp1Q6P7W2 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Shkbp1Q6P7W2 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
Shkbp1Q6P7W2 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Shkbp1Q6P7W2 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC19.93■□□□□ 0.78
Shkbp1Q6P7W2 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC19.93■□□□□ 0.78
Shkbp1Q6P7W2 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Shkbp1Q6P7W2 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms